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The map label for this gene is yddA

Identifier: 218700125

GI number: 218700125

Start: 1854811

End: 1856496

Strand: Reverse

Name: yddA

Synonym: ECIAI39_1761

Alternate gene names: 218700125

Gene position: 1856496-1854811 (Counterclockwise)

Preceding gene: 218700126

Following gene: 218700124

Centisome position: 36.17

GC content: 43.24

Gene sequence:

>1686_bases
ATGATAACCATTCCCATTACGTTTTGTATGTTGATAGCAAAGTATCTCTGTCTGCTGAAGCCCTTTTGGCTGCGTAAGAA
TAATAAAACTTCAGTGTTGTTAATCATTATTATCCTCGCCATGATCCTTGGCGTGGTTAAAATTCAGGTCTGGTTAAACG
ACTGGAATAATGATTTTTTCAATGCGCTAAGCCAGAAAGAAACTGATAAGCTTTGGCAGCTTGTCCTTTGGTTCCCTGCC
CTGCTGGGGATCTTTGTATTAATATCCGTAAACAAAACATGGTTAATTAAACTACTGACTATTCGCTGGCGCGAATGGTT
AACAGATTACTACCTTAATCGCTGGTTTGCAGATAAAAACTACTACTTCACGCAGATCTACGGCGAGCATAAAAATACAG
ATAACCCTGACCAACGTATCGCTGAAGACATTCTCTTACTGATCAGCAAAACGCTCAGTCTTTCATTTGGCTTCATCCAG
TCACTTAGCATGCTGATCACCTTTACCGTTATTCTTTGGCAAAGCGCGGGTACGCTCTCATTCACTGTTGGTGGAACTGA
ATGGAATATCCAGGGGTATATGGTCTATACCGTCGTGCTCATTGTGATCGGTGGAACTTTATTTACCCATAAGGTTGGTA
AACGTATTCGTCCGCTTAATGTGGAAAAACAACGTAGCGAAGCGACATTTCGAACTAATCTTGTGCAGCATAATAAGCAG
GCAGAACTGATTGCGCTAAGCAATGCTGAGTCTCTACAACGCCAGGAGTTGAGCGAAAATTTTCATACCATTAAAGAGAA
CTGGCATCGTTTAATGAATCGTCAGCGGTGGCTTGATTACTGGCAGAATATTTATTCGCGCTCGCTTAGCGTTCTTCCCT
ACTTTCTGTTATTGCCGCAGTTTATTAGCGGACAGATCAATCTGGGCGGACTGATGAAATCGCGCCAGGCATTTATGCTG
GTATCGAACAATTTAAGCTGGTTTATTTATAAATATGATGAACTTGCTGAACTGGCTGCGGTTATCGATCGCTTGTATGA
GTTCCATCAACTCACCGAACAGCGCCCTACGAATAAGCCTAAAAATTGCCAACATGCGGTACAAGTGGCTGACGCGAGTA
TTCGTACTCCTGATAATAAGATCATATTAGAGAACCTGAACTTTCATGTTTTGCCAGGCAAATGGCTATTGCTGAAAGGT
TACTCTGGTGCGGGAAAAACCACACTGCTTAAAACATTATCCCACTGCTGGCCGTGGTTTAAAGGTGATATTTCTTCTCC
TGCTGACAGTTGGTATGTGTCACAAACACCGTTAATCAAAACCGGCTTACTGAAAGAGATTATTTGTAAAGCACTTCCCC
TGTCCGTAGACGATAAATCGTTGAGTGAAGTACTGCATCAGGTTGGACTGGGGAAATTGGCTGCGCGTATTCATGACCAC
GATCGCTGGGGAGATATTCTTTCCAGCGGCGAAAAACAACGTATCGCCCTGGCTCGATTAATTTTACGACGTCCGAAATG
GATATTTCTTGACGAAACTACCTCTCATCTTGAGGAACAAGAGGCAATCCGCTTACTGCGTTTAGTGCGAGAAAAACTCC
CCACAAGCGGCGTCATTATGGTTACACATCAACCCGGTGTCTGGAACCTGGCCGATGATATTTGTGACATTAGCGCGGTT
TTATAA

Upstream 100 bases:

>100_bases
ATTTCTTTATATTTCATATTGTTAAATGATACTTAAATAAATTTCATCAGTATATCATTGCCATAGATAATCATTGGATG
GCACAATCAATTTTTCGCTA

Downstream 100 bases:

>100_bases
AAACAATAAAAGCCCTGCTGTACGGAGATATAAATAAATGAAGCGAGTTCTTATTCCTGGCGTCATTTTATGTGGCGCTG
ATGTAGCGCAGGCCGTCGAT

Product: putative multidrug transporter fused subunits of ABC superfamily transporter: permease component; ATP-binding protein

Products: NA

Alternate protein names: CDS102 [H]

Number of amino acids: Translated: 561; Mature: 561

Protein sequence:

>561_residues
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPA
LLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
AELIALSNAESLQRQELSENFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFML
VSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVLPGKWLLLKG
YSGAGKTTLLKTLSHCWPWFKGDISSPADSWYVSQTPLIKTGLLKEIICKALPLSVDDKSLSEVLHQVGLGKLAARIHDH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAV
L

Sequences:

>Translated_561_residues
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPA
LLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
AELIALSNAESLQRQELSENFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFML
VSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVLPGKWLLLKG
YSGAGKTTLLKTLSHCWPWFKGDISSPADSWYVSQTPLIKTGLLKEIICKALPLSVDDKSLSEVLHQVGLGKLAARIHDH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAV
L
>Mature_561_residues
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPA
LLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
AELIALSNAESLQRQELSENFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFML
VSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVLPGKWLLLKG
YSGAGKTTLLKTLSHCWPWFKGDISSPADSWYVSQTPLIKTGLLKEIICKALPLSVDDKSLSEVLHQVGLGKLAARIHDH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAV
L

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4826958, Length=523, Percent_Identity=25.0478011472275, Blast_Score=133, Evalue=5e-31,
Organism=Homo sapiens, GI9945308, Length=518, Percent_Identity=23.3590733590734, Blast_Score=119, Evalue=8e-27,
Organism=Homo sapiens, GI4506341, Length=532, Percent_Identity=21.9924812030075, Blast_Score=113, Evalue=5e-25,
Organism=Homo sapiens, GI7262393, Length=555, Percent_Identity=23.2432432432432, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI73747915, Length=249, Percent_Identity=24.4979919678715, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI73747917, Length=249, Percent_Identity=24.4979919678715, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1787772, Length=561, Percent_Identity=98.9304812834225, Blast_Score=1132, Evalue=0.0,
Organism=Escherichia coli, GI1786575, Length=363, Percent_Identity=25.6198347107438, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787112, Length=269, Percent_Identity=27.8810408921933, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1786653, Length=197, Percent_Identity=27.9187817258883, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI72000520, Length=540, Percent_Identity=26.8518518518519, Blast_Score=126, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17564250, Length=535, Percent_Identity=26.5420560747664, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17532411, Length=603, Percent_Identity=25.2072968490879, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17532409, Length=505, Percent_Identity=24.1584158415842, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI72000518, Length=563, Percent_Identity=24.6891651865009, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17542146, Length=522, Percent_Identity=21.455938697318, Blast_Score=100, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17558960, Length=184, Percent_Identity=27.7173913043478, Blast_Score=75, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324985, Length=263, Percent_Identity=27.3764258555133, Blast_Score=74, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6320339, Length=241, Percent_Identity=27.3858921161826, Blast_Score=71, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6323959, Length=285, Percent_Identity=24.9122807017544, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323217, Length=226, Percent_Identity=27.8761061946903, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24643394, Length=531, Percent_Identity=23.728813559322, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24638550, Length=540, Percent_Identity=21.2962962962963, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24638552, Length=540, Percent_Identity=21.2962962962963, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24638554, Length=540, Percent_Identity=21.2962962962963, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24638546, Length=540, Percent_Identity=21.2962962962963, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24638556, Length=540, Percent_Identity=21.2962962962963, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24638548, Length=540, Percent_Identity=21.2962962962963, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24638558, Length=540, Percent_Identity=21.2962962962963, Blast_Score=99, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 64996; Mature: 64996

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFF
CEEEHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHH
NALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTVILWQSAGTLS
EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
EEECCEEEEECHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
AELIALSNAESLQRQELSENFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQ
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKP
HHCCCCCCCHHHHCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KNCQHAVQVADASIRTPDNKIILENLNFHVLPGKWLLLKGYSGAGKTTLLKTLSHCWPWF
CHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCC
KGDISSPADSWYVSQTPLIKTGLLKEIICKALPLSVDDKSLSEVLHQVGLGKLAARIHDH
CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHCC
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIM
HHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VTHQPGVWNLADDICDISAVL
EEECCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFF
CEEEHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHH
NALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTVILWQSAGTLS
EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
EEECCEEEEECHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
AELIALSNAESLQRQELSENFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQ
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKP
HHCCCCCCCHHHHCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KNCQHAVQVADASIRTPDNKIILENLNFHVLPGKWLLLKGYSGAGKTTLLKTLSHCWPWF
CHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCC
KGDISSPADSWYVSQTPLIKTGLLKEIICKALPLSVDDKSLSEVLHQVGLGKLAARIHDH
CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHCC
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIM
HHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VTHQPGVWNLADDICDISAVL
EEECCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]