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The map label for this gene is yddB

Identifier: 218700124

GI number: 218700124

Start: 1852401

End: 1854773

Strand: Reverse

Name: yddB

Synonym: ECIAI39_1760

Alternate gene names: 218700124

Gene position: 1854773-1852401 (Counterclockwise)

Preceding gene: 218700125

Following gene: 218700123

Centisome position: 36.14

GC content: 45.89

Gene sequence:

>2373_bases
ATGAAGCGAGTTCTTATTCCTGGCGTCATTTTATGTGGCGCTGATGTAGCGCAGGCCGTCGATGACAAAAATATGTACAT
GCATGTTTTTGAAGAGATGACGGTCTATGCTCCTGTCCCTGTACCCGTAAACGGCAACACGCATTACACCAGTGAAAGCA
TCGAGCGTTTACCGACCGGGAATGGCAATATCAGCGATCTGCTGAGAACCAACCCTGCGGTACGCATGGATTCAACGCAA
AGTACCTCATTGAACCAGGGAGATATTCGCCCGGAGAAAATCTCTATTCACGGTGCGTCGCCCTACCAGAATGCCTATTT
GATTGATGGCATTAGTGCAACGAATAACCTGAACCCAGCGAATGAGTCCGATGCCAGTAGTGCAACCAATATTAGCGGGA
TGTCACAGGGCTATTATCTTGATGTCAGCTTACTGGACAATGTGACGCTTTATGACAGTTTTGTGCCGGTTGAATTTGGT
CGCTTCAATGGCGGGGTAATTGATGCAAAGATCAAACGCTTCAACGCTGATGATAGCAGCGTGAAACTGGGTTATCGCAC
TACGCGTTCGGACTGGTTAACATCGCATATCGATGAGAATAACAAGAGCGCATTTAATCAAGGTTCTTCAGGAAGTACTT
ATTACTCTCCAGATTTTAAAAAGAACTTTTATACCTTGTCGTTTAATCAGGAACTCGCTGATAACTTTGGCGTTACCGCC
GGTTTATCGCGCCGCCAGTCTGATATCACCCGCGCGGATTATGTTTCGAATGACGGCATTGTCGCCGGCCGGGCACAGTA
TAAAAACGTTATCGATACTGCATTGAGCAAATTTACTTGGTTTGCCAGCGACCGCTTTACCCACGATTTAACCTTAAAAT
ATACCGGCTCCAGCCGTGATTATAATACCAGCACCTTCCCGGAGTCTGATCGCGAAATGGGTAATAAATCCTATGGTCTG
GCATGGGATATGGATACCCAGCTCGCATGGGCCAAACTGCGTACCACCGTTGGTTGGGATCATATTAGTGATTATACCCG
TCACGATCATGACATCTGGTACACCGAACTTTCATGTACATATGGTGATATTTCAGGGCGTTGCACCCGTGGCGGATTAG
GACACATTTCCCAGGCTGTAGATAATTACACCTTCAAAACACGCCTGGACTGGCAAAAATTCACCGTGGGTAATGTTTCG
CATCAACCCTACTTCGGCGCGGAATACATCTATTCCGATGCATGGACTGAACGCCATAACCAGTCTGAATCCTATGTGAT
TAATGCTGCCGGAAAGAAAACTAACCATACCATTTACCATAAAGGTAAAGGCAGCCTGGGAATTGACAACTACACGCTGT
ATATGGCGGATCGCATTAGCTGGCGTAATGTGTCATTAATGCCCGGCGTGCGGTATGACTATGACAACTATCTGTCAAAC
CACAATATCTCCCCGCGTTTTATGACGGAATGGGATATTTTTGCTGATCAAACCTCAATGATTACCGCAGGTTATAACCG
TTACTATGGCGGGAATATTCTTGATATGGGATTACGTGATATTCGCAATAGCTGGACGGAATCGGTATCAGGCAATAAAA
CCCTGACGCGTTATCAGGATTTGAAAACGCCTTATAACGATGAACTGGCAATGGGATTGCAGCAAAAAATCAGTAAGAAC
GTTATTGCGCGCGCAAACTATGTTTACCGTGAAGCGCATGATCAAATCAGCAAAAGCAGTCGTACCGACAGCGCGACTAA
AACCACCATTACTGAATATAACAACGACGGCAAAACCAAAACGCATTCGTTCAACCTCAGTTTTGAACTGGCCGAACCCC
TGCATATCAGCCAGGTAGATATTAACCCGCAAATTGTCTTTAGCTATATCAAGAGCAAGGGCAACTTGTCGTTAAACAAT
GGTTATGAGGAGAGCAATACCGGTGATAACCAGGTGGTTTATAACGGTAATCTGGTCTCTTACGATAGCGTTCCAGTGGC
GGATTTTAATAATCCACTAAAGATCTCCTTAAACATGGATTTCACGCATCAACCGAACGGGTTGGTGTGGGCGAATACGC
TGACCTGGCAAGAAGCGCGTAAAGCTCGCATTATCCTGGGTAAGACGAATGCGCAATACATCAGCGAATATTCAGATTAC
AAGCAGTATGTTGACGAAAAACTGGATAGCAGCCTGACCTGGGACACCCGCTTGTCCTGGACGCCACAATTTCTGAAACA
ACAAAACCTGACGTTCAGTGCCGATATTCTCAATGTACTGGATAGCAAAACCGCTGTTGATACAACGAATACCGGTGTGG
CGACCTACGCCAGTGGCCGTACTTTCTGGCTTGATGTCAGCATGAAATTTTAA

Upstream 100 bases:

>100_bases
ACACATCAACCCGGTGTCTGGAACCTGGCCGATGATATTTGTGACATTAGCGCGGTTTTATAAAAACAATAAAAGCCCTG
CTGTACGGAGATATAAATAA

Downstream 100 bases:

>100_bases
TAGTTCGGATTTTACTTAACCGGGTAAATTCGCCCGGTTTTCGCATGGAGATAATTATGAGAAACCTCTGTTTCTTACTG
ACGTTAGTGGCAACTCTGTT

Product: putative porin protein

Products: NA

Alternate protein names: CDS103 [H]

Number of amino acids: Translated: 790; Mature: 790

Protein sequence:

>790_residues
MKRVLIPGVILCGADVAQAVDDKNMYMHVFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKIKRFNADDSSVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPESDREMGNKSYGL
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDISGRCTRGGLGHISQAVDNYTFKTRLDWQKFTVGNVS
HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQDLKTPYNDELAMGLQQKISKN
VIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNN
GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPNGLVWANTLTWQEARKARIILGKTNAQYISEYSDY
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTFSADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF

Sequences:

>Translated_790_residues
MKRVLIPGVILCGADVAQAVDDKNMYMHVFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKIKRFNADDSSVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPESDREMGNKSYGL
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDISGRCTRGGLGHISQAVDNYTFKTRLDWQKFTVGNVS
HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQDLKTPYNDELAMGLQQKISKN
VIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNN
GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPNGLVWANTLTWQEARKARIILGKTNAQYISEYSDY
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTFSADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF
>Mature_790_residues
MKRVLIPGVILCGADVAQAVDDKNMYMHVFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKIKRFNADDSSVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPESDREMGNKSYGL
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDISGRCTRGGLGHISQAVDNYTFKTRLDWQKFTVGNVS
HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQDLKTPYNDELAMGLQQKISKN
VIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNN
GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPNGLVWANTLTWQEARKARIILGKTNAQYISEYSDY
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTFSADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1369 [H]

Homologues:

Organism=Escherichia coli, GI1787771, Length=790, Percent_Identity=98.2278481012658, Blast_Score=1612, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug [H]

EC number: NA

Molecular weight: Translated: 89222; Mature: 89222

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVLIPGVILCGADVAQAVDDKNMYMHVFEEMTVYAPVPVPVNGNTHYTSESIERLPTG
CCCEECCCEEEECCHHHHHHCCCCCEEEEECCCEEEECCEEECCCCCCCCHHHHHHCCCC
NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA
CCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC
NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSS
CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEEECCCCCCEEEEEEEEECCCCCC
VKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
EEEEEEECCHHHHHHHCCCCCCHHCCCCCCCCEEECCCCCCCEEEEEECHHHHHHCCCCC
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD
CCCHHHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHEEEECCCEEEEEEEEECCCCCC
YNTSTFPESDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCT
CCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEE
YGDISGRCTRGGLGHISQAVDNYTFKTRLDWQKFTVGNVSHQPYFGAEYIYSDAWTERHN
ECCCCCEECCCCHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCHHHEECCHHHHHCC
QSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
CCCCEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHCC
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQD
CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHH
LKTPYNDELAMGLQQKISKNVIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCE
THSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVS
EEEEEEEEEECCCEEEEEECCCHHHHEEEHHCCCCEEECCCCCCCCCCCCEEEECCCEEE
YDSVPVADFNNPLKISLNMDFTHQPNGLVWANTLTWQEARKARIILGKTNAQYISEYSDY
ECCCCCCCCCCCEEEEEEECEEECCCCEEEEEECCHHHCCCEEEEEECCCHHHHHHHHHH
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTFSADILNVLDSKTAVDTTNTGVATYASGR
HHHHHHHHCCCCEECCCCCCCHHHHHHCCCEEHHHHHHHHCCCCEECCCCCCEEEEECCE
TFWLDVSMKF
EEEEEEEECC
>Mature Secondary Structure
MKRVLIPGVILCGADVAQAVDDKNMYMHVFEEMTVYAPVPVPVNGNTHYTSESIERLPTG
CCCEECCCEEEECCHHHHHHCCCCCEEEEECCCEEEECCEEECCCCCCCCHHHHHHCCCC
NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA
CCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC
NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSS
CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEEECCCCCCEEEEEEEEECCCCCC
VKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
EEEEEEECCHHHHHHHCCCCCCHHCCCCCCCCEEECCCCCCCEEEEEECHHHHHHCCCCC
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD
CCCHHHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHEEEECCCEEEEEEEEECCCCCC
YNTSTFPESDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCT
CCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEE
YGDISGRCTRGGLGHISQAVDNYTFKTRLDWQKFTVGNVSHQPYFGAEYIYSDAWTERHN
ECCCCCEECCCCHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCHHHEECCHHHHHCC
QSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
CCCCEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHCC
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQD
CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHH
LKTPYNDELAMGLQQKISKNVIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCE
THSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVS
EEEEEEEEEECCCEEEEEECCCHHHHEEEHHCCCCEEECCCCCCCCCCCCEEEECCCEEE
YDSVPVADFNNPLKISLNMDFTHQPNGLVWANTLTWQEARKARIILGKTNAQYISEYSDY
ECCCCCCCCCCCEEEEEEECEEECCCCEEEEEECCHHHCCCEEEEEECCCHHHHHHHHHH
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTFSADILNVLDSKTAVDTTNTGVATYASGR
HHHHHHHHCCCCEECCCCCCCHHHHHHCCCEEHHHHHHHHCCCCEECCCCCCEEEEECCE
TFWLDVSMKF
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]