Click here to switch to the map view.

The map label for this gene is ybdJ

Identifier: 218698952

GI number: 218698952

Start: 585638

End: 585886

Strand: Reverse

Name: ybdJ

Synonym: ECIAI39_0555

Alternate gene names: 218698952

Gene position: 585886-585638 (Counterclockwise)

Preceding gene: 218698953

Following gene: 218698951

Centisome position: 11.42

GC content: 49.4

Gene sequence:

>249_bases
ATGAAACACCCTTTAGAAACCTTGATCACCGCAGCAGGCATTTTGCTGATGGCTTTCCTCTCTTGCCTGCTGCTTCCCGC
CCCCGCATTTGGGCTGACGCTGGCACAAAAACTGGTGACCACGTTCCATCTGATGGATCTTAGCCAGCTTTACACTTTAT
TGTTTTGTCTGTGGTTTTTAGTGCTGGGCGCTATTGAGTATTTTGTTCTGCGCTTTATCTGGCGACGCTGGTTCTCGCTG
GCGGATTAA

Upstream 100 bases:

>100_bases
TGAAAAAGCATTGTGAGATCTGGGCCGGTGACTAAGCCGGGAATTGCCTTACAGAAGAATATCCCTGACAATGGTGTTTT
AACTTACATTTAACAATGTT

Downstream 100 bases:

>100_bases
ACGTCGATTATCGCCGAACTTCGCGGCATACTTTGCTTATTCTCCTTCGCCTAAAGGAACGTTTATGGATAAGCAATCAC
TGCACGAAACGGCGAAACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MKHPLETLITAAGILLMAFLSCLLLPAPAFGLTLAQKLVTTFHLMDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSL
AD

Sequences:

>Translated_82_residues
MKHPLETLITAAGILLMAFLSCLLLPAPAFGLTLAQKLVTTFHLMDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSL
AD
>Mature_82_residues
MKHPLETLITAAGILLMAFLSCLLLPAPAFGLTLAQKLVTTFHLMDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSL
AD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786794, Length=82, Percent_Identity=95.1219512195122, Blast_Score=130, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010590
- ProDom:   PD027061 [H]

Pfam domain/function: PF06643 DUF1158 [H]

EC number: NA

Molecular weight: Translated: 9450; Mature: 9450

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHPLETLITAAGILLMAFLSCLLLPAPAFGLTLAQKLVTTFHLMDLSQLYTLLFCLWFL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLGAIEYFVLRFIWRRWFSLAD
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKHPLETLITAAGILLMAFLSCLLLPAPAFGLTLAQKLVTTFHLMDLSQLYTLLFCLWFL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLGAIEYFVLRFIWRRWFSLAD
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]