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The map label for this gene is ygcR

Identifier: 218696369

GI number: 218696369

Start: 3111764

End: 3112543

Strand: Reverse

Name: ygcR

Synonym: EC55989_3044

Alternate gene names: 218696369

Gene position: 3112543-3111764 (Counterclockwise)

Preceding gene: 218696370

Following gene: 218696368

Centisome position: 60.38

GC content: 55.51

Gene sequence:

>780_bases
ATGAACATTCTGTTAGCGTTTAAAGCCGAACCGGATGCCGGAATGCTGGCGGAAAAAGAGTGGCAGGCGGCGGCTCAGGG
TAAAAGCGGACCGGATATTTCGCTACTGCGAAGTTTACTCGGTGCTGATGAACAGGCCGCTGCCGCGCTGCTGTTGGCGC
AGAGAAAAAACGGTACGCCGATGTCTTTAACCGCGTTGAGCATGGGGGATGAACGGGCATTGCACTGGCTGCGCTATCTC
ATGGCTCTTGGGTTTGAGGAAGCTGTATTGCTGGAGACGGCGGCAGATCTGCGCTTTGCGCCGGAATTTGTCGCTCGCCA
TATTGCCGAATGGCAGCATCAGAATCCGCTGGATCTGATAATTACCGGCTGCCAAAGCAGCGAAGGGCAGAATGGGCAAA
CGCCATTTTTGCTGGCGGAAATGCTGGGCTGGCCCTGCTTCACCCAGGTGGAGCGTTTCACTCTCGACGCGCTGTTTATC
ACCCTCGAACAGCGTACTGAACATGGTTTGCGTTGTTGCCGGGTTCGCTTGCCTGCGGTGATTGCCGTGCGTCAGTGCGG
TGAAGTGGCCTTGCCAGTACCGGGAATGCGCCAGCGAATGGCTGCGGGGAAAGCAGAAATTATCCGTAAAACTGTTGCTG
CCGAAATGCCAGCGATGCAGTGTCTGCAACTGGCAAGAGCAGAGCAACGACGCGGAGCGACGCTGATTGATGGGCAAACG
GTAGCAGAAAAAGCTCAAAAGCTATGGCAGGACTATTTACGCCAAAGGATGCAGCCATGA

Upstream 100 bases:

>100_bases
CTGGCGACAGTGTTGTTGGTTGGTTTTGTTGTGACCTGGCTATGGGCACCAGAAACTAAAGCCCTCCCGCTGGTGGCGGC
GGGAAATGTAGGAGGTGCGA

Downstream 100 bases:

>100_bases
ATATCGCAATTGTGACAATAAATCAGGAGAATGCCGCAATAGCAAGCTGGCTGGCGGCGCAGGATTTCAGCGGTTGTACC
CTGGCGCACTGGCAGATTGA

Product: putative flavoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYL
MALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFI
TLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQT
VAEKAQKLWQDYLRQRMQP

Sequences:

>Translated_259_residues
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYL
MALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFI
TLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQT
VAEKAQKLWQDYLRQRMQP
>Mature_259_residues
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYL
MALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFI
TLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQT
VAEKAQKLWQDYLRQRMQP

Specific function: May play a role in a redox process

COG id: COG2086

COG function: function code C; Electron transfer flavoprotein, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF beta-subunit/fixA family

Homologues:

Organism=Escherichia coli, GI87082158, Length=259, Percent_Identity=100, Blast_Score=524, Evalue=1e-150,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGCR_ECOLI (Q46908)

Other databases:

- EMBL:   U29579
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   F65058
- RefSeq:   AP_003337.1
- RefSeq:   NP_417250.4
- ProteinModelPortal:   Q46908
- SMR:   Q46908
- STRING:   Q46908
- EnsemblBacteria:   EBESCT00000001403
- EnsemblBacteria:   EBESCT00000017569
- GeneID:   947240
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5441
- KEGG:   eco:b2770
- EchoBASE:   EB2926
- EcoGene:   EG13125
- eggNOG:   COG2086
- GeneTree:   EBGT00050000009679
- HOGENOM:   HBG416936
- OMA:   HIAEWQY
- ProtClustDB:   CLSK880486
- BioCyc:   EcoCyc:G7436-MONOMER
- Genevestigator:   Q46908
- GO:   GO:0006810
- InterPro:   IPR014730
- InterPro:   IPR012255
- InterPro:   IPR014729
- Gene3D:   G3DSA:3.40.50.620
- PANTHER:   PTHR21294
- PIRSF:   PIRSF000090
- SMART:   SM00893

Pfam domain/function: PF01012 ETF

EC number: NA

Molecular weight: Translated: 28721; Mature: 28721

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS01065 ETF_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTP
CCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCC
MSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLI
EEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEE
ITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAV
EECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQT
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCHH
VAEKAQKLWQDYLRQRMQP
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTP
CCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCC
MSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLI
EEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEE
ITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAV
EECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQT
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCHH
VAEKAQKLWQDYLRQRMQP
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503