Click here to switch to the map view.

The map label for this gene is ygcQ

Identifier: 218696368

GI number: 218696368

Start: 3110907

End: 3111767

Strand: Reverse

Name: ygcQ

Synonym: EC55989_3043

Alternate gene names: 218696368

Gene position: 3111767-3110907 (Counterclockwise)

Preceding gene: 218696369

Following gene: 218696363

Centisome position: 60.37

GC content: 55.52

Gene sequence:

>861_bases
ATGAATATCGCAATTGTGACAATAAATCAGGAGAATGCCGCAATAGCAAGCTGGCTGGCGGCGCAGGATTTCAGCGGTTG
TACCCTGGCGCACTGGCAGATTGAACCTCAGCCTGTAGTGGCGGAACAGGTGCTGGATGCGTTGGTGGAACAGTGGCAGC
GAACGCCTGCGGACGTTGTTCTCTTTCCGCCGGGAACGTTTGGCGATGAACTGTCGACCCGGCTGGCCTGGCGTTTACAT
GGTGCAAGCATCTGCCAGGTGACTTCGTTAGATATTCCAACCGTAAGCGTGCGCAAATCCCACTGGGGAAATGCGCTAAC
GGCGACGCTGCAAACAGAAAAACGCCCGCTATGCCTTTCCCTGGCGCGTCAGGCGGGAGCAGCGAAAAACGCCACGTTGC
CCTCTGGAATGCAACAACTGAACATTGTCCCGGGTGCGCTTCCCGACTGGCTGGTTAGCACAGAGGATCTGAAAAATGTT
ACTCGCGACCCATTAGCTGAGGCCAGACGGGTGCTGGTGGTGGGGCAGGGCGGAGAGGCAGATAACCAGGAAATCGCTAT
GCTGGCAGAAAAGCTGGGAGCCGAAGTGGGCTACAGTCGGGCGCGAGTGATGAACGGTGGCGTTGATGCTGAAAAAGTGA
TTGGTATTTCCGGACATCTGCTGGCACCTGAGGTGTGTATTGTTGTTGGCGCTTCTGGCGCAGCAGCGTTAATGGCGGGC
GTACGCAATAGCAAGTTTGTGGTGGCGATTAATCATGACGCCAGCGCTGCGGTATTTTCACAGGCAGATGTTGGCGTGGT
TGATGACTGGAAAGTGGTGCTGGAGGCACTGGTGACAAACATTCACGCAGATTGCCAATAA

Upstream 100 bases:

>100_bases
GAGCAGAGCAACGACGCGGAGCGACGCTGATTGATGGGCAAACGGTAGCAGAAAAAGCTCAAAAGCTATGGCAGGACTAT
TTACGCCAAAGGATGCAGCC

Downstream 100 bases:

>100_bases
CGTGTTGCCGGATGATCCTGCCTACGGTTCTGGCCTGGGGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGG
CGCTGAATGTCGGATGTGGC

Product: putative flavoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLH
GASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNV
TRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
VRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ

Sequences:

>Translated_286_residues
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLH
GASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNV
TRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
VRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>Mature_286_residues
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLH
GASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNV
TRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
VRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ

Specific function: May play a role in a redox process

COG id: COG2025

COG function: function code C; Electron transfer flavoprotein, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF alpha-subunit/fixB family

Homologues:

Organism=Homo sapiens, GI189181759, Length=214, Percent_Identity=34.5794392523364, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI4503607, Length=214, Percent_Identity=34.5794392523364, Blast_Score=92, Evalue=6e-19,
Organism=Escherichia coli, GI87082157, Length=286, Percent_Identity=100, Blast_Score=578, Evalue=1e-166,
Organism=Escherichia coli, GI1787990, Length=237, Percent_Identity=29.957805907173, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786226, Length=116, Percent_Identity=38.7931034482759, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17506929, Length=218, Percent_Identity=33.9449541284404, Blast_Score=87, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6325261, Length=219, Percent_Identity=31.0502283105023, Blast_Score=80, Evalue=5e-16,
Organism=Drosophila melanogaster, GI17136898, Length=220, Percent_Identity=32.2727272727273, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24652801, Length=220, Percent_Identity=32.2727272727273, Blast_Score=85, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGCQ_ECOLI (Q46907)

Other databases:

- EMBL:   U29579
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   E65058
- RefSeq:   AP_003336.1
- RefSeq:   NP_417249.4
- ProteinModelPortal:   Q46907
- SMR:   Q46907
- STRING:   Q46907
- EnsemblBacteria:   EBESCT00000002768
- EnsemblBacteria:   EBESCT00000016597
- GeneID:   946413
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5440
- KEGG:   eco:b2769
- EchoBASE:   EB2925
- EcoGene:   EG13124
- eggNOG:   COG2025
- GeneTree:   EBGT00050000009611
- HOGENOM:   HBG416935
- OMA:   VDDWKAV
- ProtClustDB:   CLSK880485
- BioCyc:   EcoCyc:G7435-MONOMER
- Genevestigator:   Q46907
- GO:   GO:0006810
- InterPro:   IPR001308
- InterPro:   IPR014730
- InterPro:   IPR014731
- InterPro:   IPR014729
- Gene3D:   G3DSA:3.40.50.620
- PIRSF:   PIRSF000089

Pfam domain/function: PF01012 ETF; PF00766 ETF_alpha

EC number: NA

Molecular weight: Translated: 30308; Mature: 30308

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00696 ETF_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVV
CEEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE
LFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLS
EECCCCCCHHHHHHHEEEECCCEEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCHHHH
LARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEA
HHHHCCCCCCCCCCCCHHHHCCCCCCCCHHHCCCHHHHHHHCCHHHHCCEEEEEECCCCC
DNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
CCHHHHHHHHHHCHHCCCCHHEEECCCCCHHHEEECCCCEECCEEEEEEECCCHHHHHHC
VRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
CCCCEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVV
CEEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE
LFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLS
EECCCCCCHHHHHHHEEEECCCEEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCHHHH
LARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEA
HHHHCCCCCCCCCCCCHHHHCCCCCCCCHHHCCCHHHHHHHCCHHHHCCEEEEEECCCCC
DNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
CCHHHHHHHHHHCHHCCCCHHEEECCCCCHHHEEECCCCEECCEEEEEEECCCHHHHHHC
VRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
CCCCEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503