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The map label for this gene is ypjA [H]

Identifier: 218696253

GI number: 218696253

Start: 2992872

End: 2993471

Strand: Reverse

Name: ypjA [H]

Synonym: EC55989_2919

Alternate gene names: 218696253

Gene position: 2993471-2992872 (Counterclockwise)

Preceding gene: 218696254

Following gene: 218696250

Centisome position: 58.07

GC content: 44.5

Gene sequence:

>600_bases
GTGAACACAATACACTTGCGCTGTCTCTTCAGGATGAATCCCCTGGTCTGGTGCCTGTGGGCTGATGTTGCAGCAAAGCT
AAGGTCGCTTAAACGCTACTCAGTATTCACTTTTCAGAGGATGAAATTTATGAACAGGACCAGTCCCTATTATTGTCGCC
GCTCAGTACTTTCCTTATTGATATCTGCCTTGATATATGCCCCGCCTGGGATGACGGCCTTCACTCCTGATGTTATTGGT
GTGGTAAACGATGAGACTGTAGATGGCAGCCAAAGAGTAGATGAACGAGGTACAACAAATAACACTCATATTATCAACCA
TGGCCAGCAGAATGTTCATGGCGGGGTATCTAATGGAAGTCTTATTGAATCGGGTGGATATCAAGATGTAGGAAGTCATA
ACAATTTTGTGGGGCAGGCTAATAATACAACCATTAACGGAGGAAGACAGACAATTCATGACGGGGGCATTTCCACCGGT
ACGATAATCGACAGTGGCAATCAGGACGTTTATACAGGTGGTATCAGCAATGGAACGACAATTAAGGGTGGTAATTCACA
CTGTAGTGGTCAAGTAATATTGGCCACGGTTTTACAGTAA

Upstream 100 bases:

>100_bases
TTGACTTTTTTATCCAACCACACTTCAGCGCACTGCGTTTAAAAAATGCCTCATTCTTATGCGGAATATCATCATTTCAT
CATGATGTCTTTGATGAGCG

Downstream 100 bases:

>100_bases
AAATGGTATCTGTTCTCTGACTCTTCCGGCGTCAGCCCACCGTTATAATGGTGAGGTCTGACGCTGTTGTAGTAGTTCAA
TATGTAATCATTAATTTGCT

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MNTIHLRCLFRMNPLVWCLWADVAAKLRSLKRYSVFTFQRMKFMNRTSPYYCRRSVLSLLISALIYAPPGMTAFTPDVIG
VVNDETVDGSQRVDERGTTNNTHIINHGQQNVHGGVSNGSLIESGGYQDVGSHNNFVGQANNTTINGGRQTIHDGGISTG
TIIDSGNQDVYTGGISNGTTIKGGNSHCSGQVILATVLQ

Sequences:

>Translated_199_residues
MNTIHLRCLFRMNPLVWCLWADVAAKLRSLKRYSVFTFQRMKFMNRTSPYYCRRSVLSLLISALIYAPPGMTAFTPDVIG
VVNDETVDGSQRVDERGTTNNTHIINHGQQNVHGGVSNGSLIESGGYQDVGSHNNFVGQANNTTINGGRQTIHDGGISTG
TIIDSGNQDVYTGGISNGTTIKGGNSHCSGQVILATVLQ
>Mature_199_residues
MNTIHLRCLFRMNPLVWCLWADVAAKLRSLKRYSVFTFQRMKFMNRTSPYYCRRSVLSLLISALIYAPPGMTAFTPDVIG
VVNDETVDGSQRVDERGTTNNTHIINHGQQNVHGGVSNGSLIESGGYQDVGSHNNFVGQANNTTINGGRQTIHDGGISTG
TIIDSGNQDVYTGGISNGTTIKGGNSHCSGQVILATVLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

Organism=Escherichia coli, GI87082145, Length=147, Percent_Identity=90.4761904761905, Blast_Score=276, Evalue=7e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR006315
- InterPro:   IPR012332
- InterPro:   IPR011050
- InterPro:   IPR004899
- InterPro:   IPR003991 [H]

Pfam domain/function: PF03797 Autotransporter; PF03212 Pertactin [H]

EC number: NA

Molecular weight: Translated: 21548; Mature: 21548

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTIHLRCLFRMNPLVWCLWADVAAKLRSLKRYSVFTFQRMKFMNRTSPYYCRRSVLSLL
CCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ISALIYAPPGMTAFTPDVIGVVNDETVDGSQRVDERGTTNNTHIINHGQQNVHGGVSNGS
HHHHHHCCCCCCEECCCEEEEECCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
LIESGGYQDVGSHNNFVGQANNTTINGGRQTIHDGGISTGTIIDSGNQDVYTGGISNGTT
EEECCCCCCCCCCCCEEECCCCCEECCCCEEEECCCCCCCEEEECCCCEEEECCCCCCCE
IKGGNSHCSGQVILATVLQ
ECCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MNTIHLRCLFRMNPLVWCLWADVAAKLRSLKRYSVFTFQRMKFMNRTSPYYCRRSVLSLL
CCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ISALIYAPPGMTAFTPDVIGVVNDETVDGSQRVDERGTTNNTHIINHGQQNVHGGVSNGS
HHHHHHCCCCCCEECCCEEEEECCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
LIESGGYQDVGSHNNFVGQANNTTINGGRQTIHDGGISTGTIIDSGNQDVYTGGISNGTT
EEECCCCCCCCCCCCEEECCCCCEECCCCEEEECCCCCCCEEEECCCCEEEECCCCCCCE
IKGGNSHCSGQVILATVLQ
ECCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]