Click here to switch to the map view.

The map label for this gene is yfcS

Identifier: 218695936

GI number: 218695936

Start: 2650567

End: 2651319

Strand: Reverse

Name: yfcS

Synonym: EC55989_2581

Alternate gene names: 218695936

Gene position: 2651319-2650567 (Counterclockwise)

Preceding gene: 218695937

Following gene: 218695935

Centisome position: 51.43

GC content: 49.14

Gene sequence:

>753_bases
ATGTCTGATTTACTTTGCTCTGCCAAATTGGGTGCTACGACGCTAGCGTTACTGCTTAGCGCTGCCAGTTTGTCTGCCCA
GGCTTCTGTAACGCCAGATCGTACCCGTTTGATATTTAATGAAAGCGACAAATCAATCAGCGTGACGTTGCGCAATAACG
ATCCGAAACTGCCTTATCTGGCCCAAAGCTGGATCGAAGATGAAAAGGGTAACAAGATCAGTTCACCGTTAACTGTTCTG
CCACCGGTGCAACGCATCGATTCAATGATGAACGGGCAGGTAAAAGTGCAGGGAATGCCGGATATCAACAAATTGCCTGC
CGATCGTGAAAGCCTGTTCTACTTCAACGTGCGTGAGATCCCGCCAAAATCAAACAAAGCCAACACGCTGCAAATAGCAC
TACAAACGCGTATTAAGTTGTTCTGGCGACCGAAGGCGCTGGAGAACGTCAGCATGAAAAACCCCTGGCAATATAAGGTT
ACTTTAACCCGCAACGGTCAGGAATTTACCGTCAATAACCCGACACCGTATTACGTCATTTTCAGTAATGCCAGCACACA
GAAAAATGGCAATCCGGCAGCCGGTTTCTCGCCAATAGTGATGTCGCCGAAAACCTCTGCACCGCTGAATGTGAAGATGG
GTAGCGTGCCGGTACTGACCTATGTCAACGACTATGGCGCTCGGATGCCGCTCTTTTTCACTTGCAACGGTAACAGTTGC
CAGGTCGATGAAGAGCAGAGCCGCAAAGGCTGA

Upstream 100 bases:

>100_bases
GACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCAATCCCCCTGTTTCTGTTTCAGCTAACCAATA
ACGTGATTAAGGAATGATCC

Downstream 100 bases:

>100_bases
GGCCGGGAGAGCCAGTATGAAAGGATCTTGTTCTGTCTGGGCGGTAACTGGGTTACTGATATGTTGTGTTGGTAGCGGCT
TTGCAGTTGCAGCGAGTAAG

Product: putative periplasmic pilus exported chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSDLLCSAKLGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKISSPLTVL
PPVQRIDSMMNGQVKVQGMPDINKLPADRESLFYFNVREIPPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKV
TLTRNGQEFTVNNPTPYYVIFSNASTQKNGNPAAGFSPIVMSPKTSAPLNVKMGSVPVLTYVNDYGARMPLFFTCNGNSC
QVDEEQSRKG

Sequences:

>Translated_250_residues
MSDLLCSAKLGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKISSPLTVL
PPVQRIDSMMNGQVKVQGMPDINKLPADRESLFYFNVREIPPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKV
TLTRNGQEFTVNNPTPYYVIFSNASTQKNGNPAAGFSPIVMSPKTSAPLNVKMGSVPVLTYVNDYGARMPLFFTCNGNSC
QVDEEQSRKG
>Mature_249_residues
SDLLCSAKLGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKISSPLTVLP
PVQRIDSMMNGQVKVQGMPDINKLPADRESLFYFNVREIPPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKVT
LTRNGQEFTVNNPTPYYVIFSNASTQKNGNPAAGFSPIVMSPKTSAPLNVKMGSVPVLTYVNDYGARMPLFFTCNGNSCQ
VDEEQSRKG

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=250, Percent_Identity=91.6, Blast_Score=447, Evalue=1e-127,
Organism=Escherichia coli, GI1786936, Length=239, Percent_Identity=38.9121338912134, Blast_Score=174, Evalue=4e-45,
Organism=Escherichia coli, GI87082203, Length=223, Percent_Identity=39.9103139013453, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1786333, Length=228, Percent_Identity=35.5263157894737, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1787171, Length=222, Percent_Identity=33.7837837837838, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1789532, Length=226, Percent_Identity=30.9734513274336, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788428, Length=221, Percent_Identity=33.9366515837104, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786743, Length=238, Percent_Identity=31.9327731092437, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790771, Length=226, Percent_Identity=32.3008849557522, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87081806, Length=227, Percent_Identity=29.0748898678414, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27678; Mature: 27547

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLLCSAKLGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYL
CCCCEECCCCCHHHHHHHHHHHCCCCEECCCCCCEEEEEECCCCEEEEEEECCCCCCCHH
AQSWIEDEKGNKISSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESLFYFNVREI
HHHHHCCCCCCCCCCCEEECCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEC
PPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKVTLTRNGQEFTVNNPTPYYVI
CCCCCCCCEEEEEEEEEEEEEECCHHHCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEE
FSNASTQKNGNPAAGFSPIVMSPKTSAPLNVKMGSVPVLTYVNDYGARMPLFFTCNGNSC
EECCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCEEEEEEECCCCCCCCEEEEECCCCE
QVDEEQSRKG
EECHHHHCCC
>Mature Secondary Structure 
SDLLCSAKLGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYL
CCCEECCCCCHHHHHHHHHHHCCCCEECCCCCCEEEEEECCCCEEEEEEECCCCCCCHH
AQSWIEDEKGNKISSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESLFYFNVREI
HHHHHCCCCCCCCCCCEEECCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEC
PPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKVTLTRNGQEFTVNNPTPYYVI
CCCCCCCCEEEEEEEEEEEEEECCHHHCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEE
FSNASTQKNGNPAAGFSPIVMSPKTSAPLNVKMGSVPVLTYVNDYGARMPLFFTCNGNSC
EECCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCEEEEEEECCCCCCCCEEEEECCCCE
QVDEEQSRKG
EECHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]