BacMap

Definition	Escherichia coli 55989, complete genome.
Accession	NC_011748
Length	5,154,862

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The map label for this gene is ynjD

Identifier: 218695314

GI number: 218695314

Start: 1987178

End: 1987831

Strand: Direct

Name: ynjD

Synonym: EC55989_1924

Alternate gene names: 218695314

Gene position: 1987178-1987831 (Clockwise)

Preceding gene: 218695313

Following gene: 218695315

Centisome position: 38.55

GC content: 52.29

Gene sequence:

>654_bases
ATGCTCTGCGTGAAAAATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTACGGTGGATAAAGG
TGACATTGTCACGTTAATGGGGCCGTCTGGCTGTGGAAAATCCACTCTGTTTTCATGGATGATTGGTGCACTGGCTGGAC
AGTTTTCTTGTACAGGTGAGCTATGGCTCAATGAGCAACGGATTGACATGCTACCCACCGCACAGCGTCAGATTGGCATT
CTTTTCCAGGATGCACTGTTATTTGACCAGTTCAGCGTCGGGCAAAATTTACTGCTGGCGCTACCGTCGACGCTCAAGGG
GACTGCCAGGCGCAATGCCGTGAAAGACGCGCTTGATCGAGCGGGACTGGCTGAAACTTATCACCAGGACCCTGCGACAT
TATCAGGCGGTCAGCGAGCGCGGGTGGCCCTGCTGCGCGCCCTTCTCGCTCAGCCAAAAGCGTTACTCCTGGATGAGCCA
TTCAGCCGTCTTGATGTGGCTCTGCGCGATAATTTTCGCCAGTGGGTGTTCAGCGAAGTTCGCGAACTGGCGATCCCCGT
CGTTCAGGTAACGCACGATCTCCAGGATGTTCCTGCTGATAGTTCTGTTCTGGATATGGAGCAGTGGTCAGAAAATTACA
ACAAACTGCGATAA

Upstream 100 bases:

>100_bases
CCGCCCAGGCTTTATGGCAACTGCTATTACCGCTTATTATTTTTGCCCTGACCGCGTTAGTCGCAAAATGGGTAGGTTAT
GTCAGACAAGGACTCCGCTA

Downstream 100 bases:

>100_bases
CGCAAAGTTTTTCTCAATGCGTCAGTTCAGAATGGCGCACTCAAAACTACAATGTCGGGATTTTCGATGAAACGTGTTTC
TCAAATGACCGCGCTGGCAA

Product: putative sulfate/thiosulfate transporter subunit: ATP-binding component of ABC superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPSTLKGTARRNAVKDALDRAGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMEQWSENYNKLR

Sequences:

>Translated_217_residues
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPSTLKGTARRNAVKDALDRAGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMEQWSENYNKLR
>Mature_217_residues
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPSTLKGTARRNAVKDALDRAGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMEQWSENYNKLR

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI30795238, Length=182, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI42490749, Length=169, Percent_Identity=32.5443786982249, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI46592971, Length=154, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27262624, Length=192, Percent_Identity=30.7291666666667, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27262626, Length=192, Percent_Identity=30.7291666666667, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI46592956, Length=154, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI46592978, Length=154, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI46592915, Length=154, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI46592964, Length=154, Percent_Identity=31.8181818181818, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI46592898, Length=154, Percent_Identity=31.8181818181818, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI27881501, Length=182, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI148612844, Length=170, Percent_Identity=33.5294117647059, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI116734710, Length=156, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI255708477, Length=170, Percent_Identity=33.5294117647059, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI42741659, Length=177, Percent_Identity=31.638418079096, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI9961250, Length=171, Percent_Identity=34.5029239766082, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=94.0092165898618, Blast_Score=416, Evalue=1e-118,
Organism=Escherichia coli, GI1790467, Length=194, Percent_Identity=35.0515463917526, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87081709, Length=193, Percent_Identity=34.7150259067358, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788761, Length=201, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787029, Length=200, Percent_Identity=35, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=34.010152284264, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786253, Length=177, Percent_Identity=36.7231638418079, Blast_Score=106, Evalue=9e-25,
Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=34.010152284264, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI87082267, Length=184, Percent_Identity=33.1521739130435, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787712, Length=192, Percent_Identity=33.3333333333333, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787370, Length=184, Percent_Identity=32.6086956521739, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1786563, Length=181, Percent_Identity=34.2541436464088, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1789873, Length=187, Percent_Identity=34.2245989304813, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789672, Length=171, Percent_Identity=35.672514619883, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786872, Length=200, Percent_Identity=36.5, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789593, Length=201, Percent_Identity=29.8507462686567, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI1790544, Length=182, Percent_Identity=33.5164835164835, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786698, Length=211, Percent_Identity=31.2796208530806, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=31.8407960199005, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789962, Length=192, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786398, Length=186, Percent_Identity=33.8709677419355, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1788225, Length=205, Percent_Identity=30.7317073170732, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1788450, Length=206, Percent_Identity=33.495145631068, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1788506, Length=192, Percent_Identity=32.8125, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789032, Length=184, Percent_Identity=29.8913043478261, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1789864, Length=216, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI48994943, Length=200, Percent_Identity=29.5, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=29.3269230769231, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787089, Length=193, Percent_Identity=32.6424870466321, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI145693107, Length=215, Percent_Identity=30.6976744186047, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI48994883, Length=191, Percent_Identity=29.8429319371728, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790162, Length=211, Percent_Identity=30.3317535545024, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=34.1708542713568, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787500, Length=193, Percent_Identity=28.4974093264249, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788165, Length=205, Percent_Identity=31.219512195122, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1787112, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1787105, Length=220, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787792, Length=205, Percent_Identity=27.3170731707317, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI48995001, Length=209, Percent_Identity=30.622009569378, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789891, Length=190, Percent_Identity=31.5789473684211, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790739, Length=199, Percent_Identity=31.1557788944724, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87081782, Length=178, Percent_Identity=32.5842696629214, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1786319, Length=187, Percent_Identity=28.3422459893048, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994997, Length=205, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786345, Length=201, Percent_Identity=31.3432835820896, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789586, Length=201, Percent_Identity=28.8557213930348, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787758, Length=188, Percent_Identity=27.6595744680851, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1789963, Length=194, Percent_Identity=26.2886597938144, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786803, Length=184, Percent_Identity=29.3478260869565, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790525, Length=192, Percent_Identity=27.6041666666667, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786981, Length=185, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788210, Length=214, Percent_Identity=28.0373831775701, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082268, Length=166, Percent_Identity=30.7228915662651, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787759, Length=194, Percent_Identity=26.2886597938144, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=208, Percent_Identity=36.0576923076923, Blast_Score=83, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71996809, Length=165, Percent_Identity=33.9393939393939, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193211017, Length=165, Percent_Identity=34.5454545454545, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=165, Percent_Identity=34.5454545454545, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17567269, Length=173, Percent_Identity=32.9479768786127, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=161, Percent_Identity=33.5403726708075, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=214, Percent_Identity=27.1028037383178, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=173, Percent_Identity=34.1040462427746, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17569145, Length=170, Percent_Identity=31.7647058823529, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=164, Percent_Identity=33.5365853658537, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=174, Percent_Identity=34.4827586206897, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=180, Percent_Identity=32.2222222222222, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=31.2138728323699, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=170, Percent_Identity=31.1764705882353, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=224, Percent_Identity=29.0178571428571, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6323217, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322640, Length=233, Percent_Identity=28.755364806867, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19920532, Length=167, Percent_Identity=33.5329341317365, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24580930, Length=167, Percent_Identity=33.5329341317365, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24659289, Length=178, Percent_Identity=35.3932584269663, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21357907, Length=208, Percent_Identity=30.2884615384615, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24585557, Length=189, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45552437, Length=189, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281363262, Length=162, Percent_Identity=32.7160493827161, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24653245, Length=162, Percent_Identity=32.7160493827161, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161076682, Length=154, Percent_Identity=30.5194805194805, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161076684, Length=154, Percent_Identity=30.5194805194805, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581617, Length=154, Percent_Identity=30.5194805194805, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581615, Length=154, Percent_Identity=30.5194805194805, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574744, Length=143, Percent_Identity=32.8671328671329, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581191, Length=167, Percent_Identity=28.7425149700599, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581189, Length=167, Percent_Identity=28.7425149700599, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581193, Length=167, Percent_Identity=28.7425149700599, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581195, Length=167, Percent_Identity=28.7425149700599, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17647959, Length=161, Percent_Identity=31.6770186335404, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85725262, Length=207, Percent_Identity=28.0193236714976, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24666092, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85726357, Length=164, Percent_Identity=31.0975609756098, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574533, Length=157, Percent_Identity=33.1210191082803, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24126; Mature: 24126

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE
CEEECCCCEECCHHHHHEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPSTLKGTARRNAVKDALDR
EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHH
AGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV
CCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
RELAIPVVQVTHDLQDVPADSSVLDMEQWSENYNKLR
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE
CEEECCCCEECCHHHHHEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPSTLKGTARRNAVKDALDR
EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHH
AGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV
CCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
RELAIPVVQVTHDLQDVPADSSVLDMEQWSENYNKLR
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]