Click here to switch to the map view.

The map label for this gene is ynjC

Identifier: 218695313

GI number: 218695313

Start: 1985688

End: 1987178

Strand: Direct

Name: ynjC

Synonym: EC55989_1923

Alternate gene names: 218695313

Gene position: 1985688-1987178 (Clockwise)

Preceding gene: 218695312

Following gene: 218695314

Centisome position: 38.52

GC content: 56.47

Gene sequence:

>1491_bases
ATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCTCACGCTGATATCGCCTGCGTTGTCGTTGACACACTGGCA
GGCGTTATTTGCCGATCCACAGTTACCGCATGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGCGGTCGGGGCAT
TGTTGATTGCCCTGCTGGTGATTGTGGCGCTATGGCCTGGGCCGAAATGGCAGCGTATGTGCGCCCGTCGGCCGTGGCTG
CTCGCCATTCCCCATGTGGCTTTTGCCACCAGCGCCCTGCTGCTCTTTGCTGACGGAGGGCTGCTATATGACTATTTCCC
GTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGT
GGATCTTAGCGGCAGTATTGAGCGAAAAACGGCTGTTGCAGCAGGTCATTGTGCTGGATTCGCTGGGCTACAGCCGCTGG
CAATGCCTGAACTGGCTGCTGTTGCCCTCCGTCGCGCCTGCGCTGGCAATGGCGATGCTGGCGATTGTTGCCTGGTCGCT
TTCGGTCGTGGATGTGGCGATTATTCTTGGGCCAGGTAATCCACCGACGCTGGCAGTAATTAGCTGGCAGTGGTTAACTC
AGGGCGACGCGGATCAACAAACGAAAGGCGCACTCGCCAGTCTGCTGCTGATGCTGTTACTCGCCGCCTACGTTTTGCTG
AGCTATCTGCTATGGCGCAGCTGGCGGCGTACTATTCCCCGCGTAGATGGCGTTCGTAAGCCTGCCACACCTTTATTACC
AGGCACTACGCTGGCGAGTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTCGA
CGATCAATAGTGAAGCACTCATCAACAGTCTGACAATGGGGCTGGTAGCAACATTCATCGCTTTGCTCCTGTTACTGCAG
TGGCTGGAATGGGGGCCACAGCGTCGCCAGTTGTGGCTATGGTTGCCCATTCTATTGCCCGCTCTGCCACTGGTGGCGGG
CCAGTACACGCTGGCGCTATGGCTGAACCTGGATAGAAGCTGGACGGCGGTGGTCTGGGGGCATCTGCTGTGGGTAATGC
CGTGGATGCTGTTTATCCTGCAACCCGCCTGGCAGCGCATTGATTCACGGTTAATTTTGATTGCGCAAACACTGAGCTGG
TCGCGGGCCAAAATCTTCTTTTACGTGAAATGTCCGCTTATGCTACGCCCTACGCTGATTGCCTTCGCGGTGGGATTTTC
AGTCAGTATTGCGCAGTATATGCCGACGCTGTGGCTGGGCGCGGGGCGTTTTCCGACGCTCACCACTGAGGCGGTGGCAT
TAAGCAGCGGCGGCAGCAATGGTATTTTCGCCGCCCAGGCTTTATGGCAACTGCTATTACCGCTTATTATTTTTGCCCTG
ACCGCGTTAGTCGCAAAATGGGTAGGTTATGTCAGACAAGGACTCCGCTAA

Upstream 100 bases:

>100_bases
TGCCGCCGGTACTGGCTGAACCGCACGCAGGATGGGTGAATGCACTGGAACAAGAATGGTTACGCCGTTACGGTACGCAT
TAATCTTTTTGCTGTGGGCG

Downstream 100 bases:

>100_bases
TGCTCTGCGTGAAAAATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTACGGTGGATAAAGGT
GACATTGTCACGTTAATGGG

Product: fused putative transporter subunits of ABC superfamily: membrane components

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPHALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARRPWL
LAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRW
QCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
SYLLWRSWRRTIPRVDGVRKPATPLLPGTTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLLQ
WLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDRSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLSW
SRAKIFFYVKCPLMLRPTLIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGIFAAQALWQLLLPLIIFAL
TALVAKWVGYVRQGLR

Sequences:

>Translated_496_residues
MVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPHALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARRPWL
LAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRW
QCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
SYLLWRSWRRTIPRVDGVRKPATPLLPGTTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLLQ
WLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDRSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLSW
SRAKIFFYVKCPLMLRPTLIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGIFAAQALWQLLLPLIIFAL
TALVAKWVGYVRQGLR
>Mature_496_residues
MVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPHALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARRPWL
LAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRW
QCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
SYLLWRSWRRTIPRVDGVRKPATPLLPGTTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLLQ
WLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDRSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLSW
SRAKIFFYVKCPLMLRPTLIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGIFAAQALWQLLLPLIIFAL
TALVAKWVGYVRQGLR

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=496, Percent_Identity=97.1774193548387, Blast_Score=821, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 54635; Mature: 54635

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPHALLATLVSTTIAAVGALLIALLV
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IVALWPGPKWQRMCARRPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGL
HHHHCCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHCCCC
GLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAML
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
HHHHHHHHHHEEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SYLLWRSWRRTIPRVDGVRKPATPLLPGTTLASFLPLTGVLCVVLLAILADQSTINSEAL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
INSLTMGLVATFIALLLLLQWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDRS
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHHHHHHHHHCCCEEEEEEEECCCC
WTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLSWSRAKIFFYVKCPLMLRPTLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCHHHHHHHH
AFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGIFAAQALWQLLLPLIIFAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
TALVAKWVGYVRQGLR
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPHALLATLVSTTIAAVGALLIALLV
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IVALWPGPKWQRMCARRPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGL
HHHHCCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHCCCC
GLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAML
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
HHHHHHHHHHEEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SYLLWRSWRRTIPRVDGVRKPATPLLPGTTLASFLPLTGVLCVVLLAILADQSTINSEAL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
INSLTMGLVATFIALLLLLQWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDRS
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHHHHHHHHHCCCEEEEEEEECCCC
WTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLSWSRAKIFFYVKCPLMLRPTLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCHHHHHHHH
AFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGIFAAQALWQLLLPLIIFAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
TALVAKWVGYVRQGLR
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]