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The map label for this gene is rutC

Identifier: 218694546

GI number: 218694546

Start: 1180206

End: 1180592

Strand: Reverse

Name: rutC

Synonym: EC55989_1121

Alternate gene names: 218694546

Gene position: 1180592-1180206 (Counterclockwise)

Preceding gene: 218694547

Following gene: 218694545

Centisome position: 22.9

GC content: 53.75

Gene sequence:

>387_bases
ATGCCAAAATCCGTAATTATTCCCGCTGGCAGCAGCGCACCGCTGGCCCCCTTCGTTCCCGGCACGCTGGCTGATGGCGT
GGTGTATGTCTCCGGTACGCTGGCTTTTGATCAACATAATAACGTGCTGTTTGCCGATGACCCAAAGGCGCAAACCCGCC
ACGTTCTGGAAATTATCCGCAAGGTGATCGAGACGGCGGGTGGCACGATGGCGGATGTGACCTTCAACAGCATCTTTATT
ACCGACTGGAAAAATTACGCCGCGATTAACGAAATCTACGCCGAGTTTTTTCCGGGTGATAAACCGGCGCGATTCTGCAT
TCAGTGCGGACTGGTAAAACCTGACGCGCTGGTGGAAATCGCCACAATTGCGCATATCGCCAAGTGA

Upstream 100 bases:

>100_bases
TCAATATCGAAACCTTTTTTGGCTGGGTCAGCGACGTCGAAACGTTCTGCGACGCGCTTTCTCCCACATCCTTTGCTCGT
ATCGCTTAAGGAGTTTAACG

Downstream 100 bases:

>100_bases
GGCCGCGATGAAACTTTCACTCTCACCTCCCCCTTATGCTGATGCGCCCGTAGTGGTGTTGATTTCGGGTCTTGGCGGTA
GCGGCAGTTACTGGTTACCG

Product: enzyme of the alternative pyrimidine degradation pathway

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLEIIRKVIETAGGTMADVTFNSIFI
TDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK

Sequences:

>Translated_128_residues
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLEIIRKVIETAGGTMADVTFNSIFI
TDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>Mature_127_residues
PKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLEIIRKVIETAGGTMADVTFNSIFIT
DWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI1787245, Length=128, Percent_Identity=99.21875, Blast_Score=261, Evalue=8e-72,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=29.6, Blast_Score=62, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=36.0655737704918, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13775; Mature: 13644

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLEIIR
CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEECCCCHHHHHHHHHHH
KVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEI
HHHHHCCCEEEEEEECEEEEECCCCHHHHHHHHHHHCCCCCCCEEHEEECCCCCHHHHHH
ATIAHIAK
HHHHHHCC
>Mature Secondary Structure 
PKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLEIIR
CCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEECCCCHHHHHHHHHHH
KVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEI
HHHHHCCCEEEEEEECEEEEECCCCHHHHHHHHHHHCCCCCCCEEHEEECCCCCHHHHHH
ATIAHIAK
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA