Click here to switch to the map view.

The map label for this gene is ycbR

Identifier: 218694414

GI number: 218694414

Start: 1061359

End: 1062060

Strand: Direct

Name: ycbR

Synonym: EC55989_0988

Alternate gene names: 218694414

Gene position: 1061359-1062060 (Clockwise)

Preceding gene: 218694413

Following gene: 218694415

Centisome position: 20.59

GC content: 45.01

Gene sequence:

>702_bases
ATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGC
AGGTAAAGGCGGGATTGGACTTGCAGCAACACGTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTA
ACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGATTTTATTATT
ACACCACCGCTATTTGTGCTGAATCCGGCTAATGAGAATCTGTTACGCATTATGTACATTGGTGCGCCGTTGGCGAAAGA
CAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGGAAGAGGGAAATACCCTGAAGATTG
CCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGGTTTAGCGTATCCCTTAGGCGAGGCTCCGGCGAAACTGCGT
TGCACTTCGTCAGCTGACATGGTTACGGTCAGTAACCCAACACCTTATTTCATTACCCTGACAGACCTGAAAATAGGTGG
AAAAGTAGTTAAAAATCAAATGATTTCCCCCTTTGATAAATACCAATTTTCTCTGCCAAAGGGGGCCAAAAATAGCAGCG
TAACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAA

Upstream 100 bases:

>100_bases
CATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCTAGTGTTCTGGAGGGGATATTCATA
TTTTTTAAGAGTGACTATTT

Downstream 100 bases:

>100_bases
GCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTT
TATTGGTGGGCTGGTGGTGT

Product: putative periplasmic pilin chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFII
TPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLR
CTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS

Sequences:

>Translated_233_residues
MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFII
TPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLR
CTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS
>Mature_233_residues
MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFII
TPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLR
CTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS

Specific function: Could be required for the biogenesis of the putative ycbQ fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1787171, Length=233, Percent_Identity=99.5708154506438, Blast_Score=475, Evalue=1e-135,
Organism=Escherichia coli, GI1790771, Length=224, Percent_Identity=43.3035714285714, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1786743, Length=207, Percent_Identity=40.5797101449275, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1789532, Length=219, Percent_Identity=34.2465753424658, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87082203, Length=246, Percent_Identity=31.7073170731707, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1788677, Length=203, Percent_Identity=35.4679802955665, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786936, Length=236, Percent_Identity=32.2033898305085, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081806, Length=222, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786333, Length=227, Percent_Identity=28.6343612334802, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788428, Length=227, Percent_Identity=25.5506607929515, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25390; Mature: 25390

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVP
CCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEHHCCCCEEEEEECCCCCCCC
YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP
HHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCC
STTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL
CCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEEEE
TDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS
EEEECCCHHHHHHHCCCHHHEEEECCCCCCCCCEEEEEEHHCCCCCCCCCCCC
>Mature Secondary Structure
MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVP
CCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEHHCCCCEEEEEECCCCCCCC
YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP
HHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCC
STTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL
CCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEEEE
TDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS
EEEECCCHHHHHHHCCCHHHEEEECCCCCCCCCEEEEEEHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]