Click here to switch to the map view.

The map label for this gene is sfmF

Identifier: 218693997

GI number: 218693997

Start: 591142

End: 591657

Strand: Direct

Name: sfmF

Synonym: EC55989_0548

Alternate gene names: 218693997

Gene position: 591142-591657 (Clockwise)

Preceding gene: 218693996

Following gene: 218694012

Centisome position: 11.47

GC content: 50.0

Gene sequence:

>516_bases
ATGAGAAGAGCACTCTTTAGCTGTTTCTGCGGGTTACTGTGGATTTCCAGTGGATGGGCAGCTGACCCTTTGGGAACGAT
TAATATCAATTTGCACGGTAACGTTGTTGATTTCTCCTGTACCGTAAACACTGCGGATATTGATAAGACGGTAGATTTAG
GCAGATGGCCTACGACACAATTACTGAACGCTGGCGATACCACGGCACTCGTCCCTTTTAGCCTGCGGCTGGAGGGATGT
CCTCCGGGTTCAGTTGCGATTTTATTTACGGGAACGCCGGCATCCGATACCAACCTGCTGGCTCTGGATGATCCCGCAAT
GGCGCAAACCATCGCCATCGAATTACGTAATAGCGATCGCTCCCGGCTCGCACTGGGAGCGGCGAGCCCGACTGAGGAAG
TAGATGCAAATGGCAATGTCACACTAAACTTTTTTGCCAATTATCGAGCGTTAGCCAGCGGTGTTCGGCCAGGTGTGGCG
AAAGCGGATGCGATATTTATGATCAATTATAATTAA

Upstream 100 bases:

>100_bases
CTTCGCGCCTGGCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGA
TTATCAATGAGGTACGGAGA

Downstream 100 bases:

>100_bases
TATTATATTAATTCGTATAATTTGGCGTAGTCGATAAGCTCTACAATTGAATGCAAACCTAGCTTGCCATAAATATTAGA
TTTATGCGCACTAACTGTTT

Product: putative fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MRRALFSCFCGLLWISSGWAADPLGTININLHGNVVDFSCTVNTADIDKTVDLGRWPTTQLLNAGDTTALVPFSLRLEGC
PPGSVAILFTGTPASDTNLLALDDPAMAQTIAIELRNSDRSRLALGAASPTEEVDANGNVTLNFFANYRALASGVRPGVA
KADAIFMINYN

Sequences:

>Translated_171_residues
MRRALFSCFCGLLWISSGWAADPLGTININLHGNVVDFSCTVNTADIDKTVDLGRWPTTQLLNAGDTTALVPFSLRLEGC
PPGSVAILFTGTPASDTNLLALDDPAMAQTIAIELRNSDRSRLALGAASPTEEVDANGNVTLNFFANYRALASGVRPGVA
KADAIFMINYN
>Mature_171_residues
MRRALFSCFCGLLWISSGWAADPLGTININLHGNVVDFSCTVNTADIDKTVDLGRWPTTQLLNAGDTTALVPFSLRLEGC
PPGSVAILFTGTPASDTNLLALDDPAMAQTIAIELRNSDRSRLALGAASPTEEVDANGNVTLNFFANYRALASGVRPGVA
KADAIFMINYN

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786746, Length=171, Percent_Identity=97.0760233918129, Blast_Score=338, Evalue=2e-94,
Organism=Escherichia coli, GI1790773, Length=181, Percent_Identity=33.7016574585635, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1786938, Length=186, Percent_Identity=27.9569892473118, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1790769, Length=151, Percent_Identity=33.7748344370861, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87081753, Length=150, Percent_Identity=31.3333333333333, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18149; Mature: 18149

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRALFSCFCGLLWISSGWAADPLGTININLHGNVVDFSCTVNTADIDKTVDLGRWPTTQ
CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCEECCCCCHHH
LLNAGDTTALVPFSLRLEGCPPGSVAILFTGTPASDTNLLALDDPAMAQTIAIELRNSDR
EECCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEEEEECCCC
SRLALGAASPTEEVDANGNVTLNFFANYRALASGVRPGVAKADAIFMINYN
CEEEEECCCCCHHCCCCCCEEEEEEECCHHHHCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MRRALFSCFCGLLWISSGWAADPLGTININLHGNVVDFSCTVNTADIDKTVDLGRWPTTQ
CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCEECCCCCHHH
LLNAGDTTALVPFSLRLEGCPPGSVAILFTGTPASDTNLLALDDPAMAQTIAIELRNSDR
EECCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEEEEECCCC
SRLALGAASPTEEVDANGNVTLNFFANYRALASGVRPGVAKADAIFMINYN
CEEEEECCCCCHHCCCCCCEEEEEEECCHHHHCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 2183007; 7984428 [H]