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The map label for this gene is traJ

Identifier: 218692900

GI number: 218692900

Start: 89774

End: 90520

Strand: Reverse

Name: traJ

Synonym: p1ECUMN_0115

Alternate gene names: 218692900

Gene position: 90520-89774 (Counterclockwise)

Preceding gene: 218692901

Following gene: 218692899

Centisome position: 74.01

GC content: 37.08

Gene sequence:

>747_bases
ATGCAGGGAGGTCTGAACTCCCTGCATCGACTGTCCATAGAATCCTTAACGGAGGTTCCTATGTGTGCGCTGGATCGTAG
AGAAAGGCCACTTAACAGTCAATCTGTAAATAAATACATCCTTAACGTTCAGAATATCTACAGAAATTCTCCCGTTCCGG
TTTGTGTCCGTAACAAAAACCGGAAAATCCTTTATGCCAATGGGGCTTTTATTGAACTCTTTTCCAGAGAAGATAAACCC
TTATCCGGAGAGAGTTATATACGTCTGCAGGTTGAAATTTTTCTTTCATCACTTGAACTGGAATGCCAGGCTCTTGGACA
TGGCTCTGCATTTTGTCGTCGTTTTAATTTTCATGGCGAAATCTATCAGATAAGGATGGAGAATGTTTCTTTTTATAATG
ACGAATCTGTTGTTTTATGGCAAATTAATCCGTTTCCTGATTATCCATTTTTTGCGTTAAATCAGAGTGGAAGTAATACA
AATACTTCTGATAAATTAACGATATGGAATGATCTTTCTCCAGGGACATTGGTTGTTTTCTCTTTTTATATGCTGGGTGT
TGGTCACGCAACAATTGCCAGAGAGTTGGGTATTACAGACAGAGCATCTGAGGATCGAATTAAACCAGTTAAACGGAAAA
TAAAAGAATTTTTTGAACACTTTGATTTATTCAGAGTGTCATGTATCTATAAAGGAGAAATAGATTCGCTATTAAGTATA
ATTCGTGAATTTTATGGTGTTAAGTAA

Upstream 100 bases:

>100_bases
AGGATTTTGATCTGGTTCAATTTGATGACAATTAACCGCATAAAGGTTATATTAATTACGTGGTTAATGCCACGTTAAAA
ATTGAAACTGAAAATCGCCG

Downstream 100 bases:

>100_bases
ATGTTAAATAAGGTGCGCCAATTTTGGCGTGTTTTTTTTCGTCGGTTTCTGTGCAATCATGATTTTATTAGTCGGGAAAC
AGAGGTGAATTGAGTGAGGA

Product: conjugation transfer regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MQGGLNSLHRLSIESLTEVPMCALDRRERPLNSQSVNKYILNVQNIYRNSPVPVCVRNKNRKILYANGAFIELFSREDKP
LSGESYIRLQVEIFLSSLELECQALGHGSAFCRRFNFHGEIYQIRMENVSFYNDESVVLWQINPFPDYPFFALNQSGSNT
NTSDKLTIWNDLSPGTLVVFSFYMLGVGHATIARELGITDRASEDRIKPVKRKIKEFFEHFDLFRVSCIYKGEIDSLLSI
IREFYGVK

Sequences:

>Translated_248_residues
MQGGLNSLHRLSIESLTEVPMCALDRRERPLNSQSVNKYILNVQNIYRNSPVPVCVRNKNRKILYANGAFIELFSREDKP
LSGESYIRLQVEIFLSSLELECQALGHGSAFCRRFNFHGEIYQIRMENVSFYNDESVVLWQINPFPDYPFFALNQSGSNT
NTSDKLTIWNDLSPGTLVVFSFYMLGVGHATIARELGITDRASEDRIKPVKRKIKEFFEHFDLFRVSCIYKGEIDSLLSI
IREFYGVK
>Mature_248_residues
MQGGLNSLHRLSIESLTEVPMCALDRRERPLNSQSVNKYILNVQNIYRNSPVPVCVRNKNRKILYANGAFIELFSREDKP
LSGESYIRLQVEIFLSSLELECQALGHGSAFCRRFNFHGEIYQIRMENVSFYNDESVVLWQINPFPDYPFFALNQSGSNT
NTSDKLTIWNDLSPGTLVVFSFYMLGVGHATIARELGITDRASEDRIKPVKRKIKEFFEHFDLFRVSCIYKGEIDSLLSI
IREFYGVK

Specific function: Together with ArcA, is essential for positively regulating the expression of transfer genes that are involved in the conjugal transfer of DNA between bacterial cells [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR016384 [H]

Pfam domain/function: PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 28597; Mature: 28597

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGGLNSLHRLSIESLTEVPMCALDRRERPLNSQSVNKYILNVQNIYRNSPVPVCVRNKN
CCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC
RKILYANGAFIELFSREDKPLSGESYIRLQVEIFLSSLELECQALGHGSAFCRRFNFHGE
CEEEEECCCEEEEECCCCCCCCCCCEEEEEEEEEEHHHCEEEEECCCCHHHHHEECCCCE
IYQIRMENVSFYNDESVVLWQINPFPDYPFFALNQSGSNTNTSDKLTIWNDLSPGTLVVF
EEEEEECCEEEECCCEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHH
SFYMLGVGHATIARELGITDRASEDRIKPVKRKIKEFFEHFDLFRVSCIYKGEIDSLLSI
HHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHH
IREFYGVK
HHHHHCCC
>Mature Secondary Structure
MQGGLNSLHRLSIESLTEVPMCALDRRERPLNSQSVNKYILNVQNIYRNSPVPVCVRNKN
CCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC
RKILYANGAFIELFSREDKPLSGESYIRLQVEIFLSSLELECQALGHGSAFCRRFNFHGE
CEEEEECCCEEEEECCCCCCCCCCCEEEEEEEEEEHHHCEEEEECCCCHHHHHEECCCCE
IYQIRMENVSFYNDESVVLWQINPFPDYPFFALNQSGSNTNTSDKLTIWNDLSPGTLVVF
EEEEEECCEEEECCCEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHH
SFYMLGVGHATIARELGITDRASEDRIKPVKRKIKEFFEHFDLFRVSCIYKGEIDSLLSI
HHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHH
IREFYGVK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3012278; 2564189 [H]