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The map label for this gene is traB

Identifier: 218692892

GI number: 218692892

Start: 84805

End: 86232

Strand: Reverse

Name: traB

Synonym: p1ECUMN_0107

Alternate gene names: 218692892

Gene position: 86232-84805 (Counterclockwise)

Preceding gene: 218692893

Following gene: 218692891

Centisome position: 70.51

GC content: 57.07

Gene sequence:

>1428_bases
ATGGCCAGTATCAATACCATTGTGAAACGCAAGCAGTACCTGTGGCTGGGGATTGTGGTTGTCGGTGCAGCCTCCGCGAT
TGGTGGGGTACTGTATCTGTCTGATGTGGACATGTCCGGTAACGGTGAGGCGGTGGCTGAACAGGAGCCTGTGCCGGATA
TGACAGGTGTGGTGGATACGACCTTTGATGACAAGGTGCGTCAGCATGCCACCACAGAGATGCAGGTGACGGCAGCGCAG
ATGCAGAAGCAGTATGAGGAAATCCGTCGTGAACTGGATGTCCTGAACAAACAGCGCGGTGATGACCAGCGTCGTATTGA
AAAGCTGGGACAGGACAATGCCGCCCTGGCAGAGCAGGTAAAAGCCCTGGGTGCTAATCCCGTCACGGCGACCGGTGAGC
CTGTACCTCAGATGCCTGCCTCACCGCCCGGGCCGGAAGGCGAACCACAGCCAGGAAACACCCCCGTATCCTTCCCGCCG
CAGGGCAGCGTTGCTGTTCCACCGCCGACGGCGTTTTATCCCGGGAATGGTGTCACGCCACCACCACAGGTGACGTACCA
GTCTGTGCCGGTGCCTAACCGGATACAGCGTAAGGTGTTTACCCGTAATGAGGGAAAACAGGGAACATCGCTGCCGTACA
TTCCGTCAGGAAGTTTTGCGAAAGCCATGCTGATTGAAGGGGCGGATGCCAATGCCTCAGTCACCGGTAATGAATCCACG
GTGCCGATGCAGTTGCGTATCACCGGCCTGGTGGAAATGCCGAACAGCAAGACGTATGACGCAACGGGATGTTTTGTGGG
GCTGGAAGCCTGGGGGGATGTGTCCAGTGAGCGTGCCATTGTACGCACCCGCAATATCAGTTGCCTGAAGGACGGCAAAA
CTATTGATATGCCGATTAAGGGGCATGTCAGCTTCCGGGGTAAAAACGGTATCAAGGGCGAAGTGGTGATGCGTAACGGC
AAAATCCTCGGCTGGGCATGGGGCGCGGGATTTGTTGACGGTATCGGTCAGGGAATGGAGCGCGCCTCCCAGCCGGCTGT
CGGGCTGGGTGCCACAGCCGCTTACGGGGCTGGTGATGTCCTGAAAATGGGTATCGGTGGCGGCGCATCGAAAGCCGCAC
AGACGCTCAGTGACTACTACATCAAACGTGCCGAACAGTATCACCCGGTGATACCGATTGGTGCGGGCAACGAAGTGACC
GTGGTGTTCCAGGACGGCTTCCAGCTGAAAACCGTGGAAGAGATGGCGCTGGAGCGCACGCAGAACAGAGCGGAAGAAGA
TAATCCGGAAAGTCCGGTTCCTGTTCCGCCATCAGCTGAAAGTCATCTTAACGGCTTTAATACTGACCAGATGCTGAAGC
AGCTGGGCAACCTGAATCCGCAGCAGTTTATGTCCGGCAGCCAGGGAGGAGGCAACGATGGCAAATAA

Upstream 100 bases:

>100_bases
AGCCGGGAACCCGTGCCGTGATGTTCAGCCAGCCTGCCAGCCAGTTACTGGCAGGTGCGCGCATGGATGTGTATGTCATC
CGTGACGGGGAGGGCAACTG

Downstream 100 bases:

>100_bases
TATGTCGTCCCGTCAGGCGTGCCATGCCGCCCGGTATGTTGTCGCCCGGGTTCTGCGAGGACTGTTCTGGTGTCTGAAGT
ACACCGTCATTCTGCCACTG

Product: conjugal transfer protein TraB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MASINTIVKRKQYLWLGIVVVGAASAIGGVLYLSDVDMSGNGEAVAEQEPVPDMTGVVDTTFDDKVRQHATTEMQVTAAQ
MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPP
QGSVAVPPPTAFYPGNGVTPPPQVTYQSVPVPNRIQRKVFTRNEGKQGTSLPYIPSGSFAKAMLIEGADANASVTGNEST
VPMQLRITGLVEMPNSKTYDATGCFVGLEAWGDVSSERAIVRTRNISCLKDGKTIDMPIKGHVSFRGKNGIKGEVVMRNG
KILGWAWGAGFVDGIGQGMERASQPAVGLGATAAYGAGDVLKMGIGGGASKAAQTLSDYYIKRAEQYHPVIPIGAGNEVT
VVFQDGFQLKTVEEMALERTQNRAEEDNPESPVPVPPSAESHLNGFNTDQMLKQLGNLNPQQFMSGSQGGGNDGK

Sequences:

>Translated_475_residues
MASINTIVKRKQYLWLGIVVVGAASAIGGVLYLSDVDMSGNGEAVAEQEPVPDMTGVVDTTFDDKVRQHATTEMQVTAAQ
MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPP
QGSVAVPPPTAFYPGNGVTPPPQVTYQSVPVPNRIQRKVFTRNEGKQGTSLPYIPSGSFAKAMLIEGADANASVTGNEST
VPMQLRITGLVEMPNSKTYDATGCFVGLEAWGDVSSERAIVRTRNISCLKDGKTIDMPIKGHVSFRGKNGIKGEVVMRNG
KILGWAWGAGFVDGIGQGMERASQPAVGLGATAAYGAGDVLKMGIGGGASKAAQTLSDYYIKRAEQYHPVIPIGAGNEVT
VVFQDGFQLKTVEEMALERTQNRAEEDNPESPVPVPPSAESHLNGFNTDQMLKQLGNLNPQQFMSGSQGGGNDGK
>Mature_474_residues
ASINTIVKRKQYLWLGIVVVGAASAIGGVLYLSDVDMSGNGEAVAEQEPVPDMTGVVDTTFDDKVRQHATTEMQVTAAQM
QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQ
GSVAVPPPTAFYPGNGVTPPPQVTYQSVPVPNRIQRKVFTRNEGKQGTSLPYIPSGSFAKAMLIEGADANASVTGNESTV
PMQLRITGLVEMPNSKTYDATGCFVGLEAWGDVSSERAIVRTRNISCLKDGKTIDMPIKGHVSFRGKNGIKGEVVMRNGK
ILGWAWGAGFVDGIGQGMERASQPAVGLGATAAYGAGDVLKMGIGGGASKAAQTLSDYYIKRAEQYHPVIPIGAGNEVTV
VFQDGFQLKTVEEMALERTQNRAEEDNPESPVPVPPSAESHLNGFNTDQMLKQLGNLNPQQFMSGSQGGGNDGK

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 50459; Mature: 50328

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASINTIVKRKQYLWLGIVVVGAASAIGGVLYLSDVDMSGNGEAVAEQEPVPDMTGVVDT
CCCHHHHHHHHHHHEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEC
TFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHH
KALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTP
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
PPQVTYQSVPVPNRIQRKVFTRNEGKQGTSLPYIPSGSFAKAMLIEGADANASVTGNEST
CCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEECCCCCC
VPMQLRITGLVEMPNSKTYDATGCFVGLEAWGDVSSERAIVRTRNISCLKDGKTIDMPIK
EEEEEEEEEEEECCCCCCCCCCCEEEEEHHCCCCCCCCEEEEECCCEEEECCCEEECEEC
GHVSFRGKNGIKGEVVMRNGKILGWAWGAGFVDGIGQGMERASQPAVGLGATAAYGAGDV
EEEEECCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCE
LKMGIGGGASKAAQTLSDYYIKRAEQYHPVIPIGAGNEVTVVFQDGFQLKTVEEMALERT
EEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCEEHHHHHHHHHHH
QNRAEEDNPESPVPVPPSAESHLNGFNTDQMLKQLGNLNPQQFMSGSQGGGNDGK
HHHCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ASINTIVKRKQYLWLGIVVVGAASAIGGVLYLSDVDMSGNGEAVAEQEPVPDMTGVVDT
CCHHHHHHHHHHHEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEC
TFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHH
KALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTP
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
PPQVTYQSVPVPNRIQRKVFTRNEGKQGTSLPYIPSGSFAKAMLIEGADANASVTGNEST
CCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEECCCCCC
VPMQLRITGLVEMPNSKTYDATGCFVGLEAWGDVSSERAIVRTRNISCLKDGKTIDMPIK
EEEEEEEEEEEECCCCCCCCCCCEEEEEHHCCCCCCCCEEEEECCCEEEECCCEEECEEC
GHVSFRGKNGIKGEVVMRNGKILGWAWGAGFVDGIGQGMERASQPAVGLGATAAYGAGDV
EEEEECCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCE
LKMGIGGGASKAAQTLSDYYIKRAEQYHPVIPIGAGNEVTVVFQDGFQLKTVEEMALERT
EEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCEEHHHHHHHHHHH
QNRAEEDNPESPVPVPPSAESHLNGFNTDQMLKQLGNLNPQQFMSGSQGGGNDGK
HHHCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]