Click here to switch to the map view.

The map label for this gene is trbD [H]

Identifier: 218692890

GI number: 218692890

Start: 83918

End: 84271

Strand: Reverse

Name: trbD [H]

Synonym: p1ECUMN_0105

Alternate gene names: 218692890

Gene position: 84271-83918 (Counterclockwise)

Preceding gene: 218692891

Following gene: 218692889

Centisome position: 68.9

GC content: 41.24

Gene sequence:

>354_bases
ATGACAGAACAAACAGAAACAACGGAGATAAAAATGAACATGCGTAATATTAATGCTATTACAGCCCTTTCTGTACCGGG
TAAAACTATGTCAGATGATTTTATGCATGCTGTTCTCAGTAACTGCACCACAAGAATCGTCCTTCCTGCACCGAAGGAAT
TCAGTTCTGAATCATTGCCGCACAATTTTAATATGGCTGCTGTCGGTGTGATGAAGGAGGGAATGTCGATGCGTTTATTT
TCTTCTCCTGGGCATATTGTGGTTGCCGGACAATCCGGTGGCGGAAAATCTGCTTCGGTGAAAGAACTAATCGACAGAAT
TATTCAGAAATATAAGGAACCCTTCGATGAATAA

Upstream 100 bases:

>100_bases
TGTATCCGGGTGGTAACCGCAGATGAACATCTGAAGGAAGTTTATACGGAAGACGCTTCCCTGCCGGGAAAAATCAGGAA
ATGCCCTGTTTATCTTCCTG

Downstream 100 bases:

>100_bases
GCTGGTTTCTGATGGCAACGTCAAAAAAAATAAATTATCCGGTGCTGTATGAGTCCGGAATAACACCTCCGTTATGTGAA
GTCAGTGCACCAGAACCTGA

Product: conjugal transfer protein TrbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MTEQTETTEIKMNMRNINAITALSVPGKTMSDDFMHAVLSNCTTRIVLPAPKEFSSESLPHNFNMAAVGVMKEGMSMRLF
SSPGHIVVAGQSGGGKSASVKELIDRIIQKYKEPFDE

Sequences:

>Translated_117_residues
MTEQTETTEIKMNMRNINAITALSVPGKTMSDDFMHAVLSNCTTRIVLPAPKEFSSESLPHNFNMAAVGVMKEGMSMRLF
SSPGHIVVAGQSGGGKSASVKELIDRIIQKYKEPFDE
>Mature_116_residues
TEQTETTEIKMNMRNINAITALSVPGKTMSDDFMHAVLSNCTTRIVLPAPKEFSSESLPHNFNMAAVGVMKEGMSMRLFS
SPGHIVVAGQSGGGKSASVKELIDRIIQKYKEPFDE

Specific function: Unknown. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12793; Mature: 12662

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQTETTEIKMNMRNINAITALSVPGKTMSDDFMHAVLSNCTTRIVLPAPKEFSSESLP
CCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCC
HNFNMAAVGVMKEGMSMRLFSSPGHIVVAGQSGGGKSASVKELIDRIIQKYKEPFDE
CCCCCEEEHHHHCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TEQTETTEIKMNMRNINAITALSVPGKTMSDDFMHAVLSNCTTRIVLPAPKEFSSESLP
CCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCC
HNFNMAAVGVMKEGMSMRLFSSPGHIVVAGQSGGGKSASVKELIDRIIQKYKEPFDE
CCCCCEEEHHHHCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7915817 [H]