Click here to switch to the map view.

The map label for this gene is repA

Identifier: 218692855

GI number: 218692855

Start: 51023

End: 51892

Strand: Reverse

Name: repA

Synonym: p1ECUMN_0069

Alternate gene names: 218692855

Gene position: 51892-51023 (Counterclockwise)

Preceding gene: 218692856

Following gene: 218692854

Centisome position: 42.43

GC content: 56.78

Gene sequence:

>870_bases
GTGCAGGATGGTGTGACTGATCTTCAACAAACGTATTACCGCCAGGTAAAGAACCCGAATCCGGTGTTTACACCCCGTAA
AGGTGCCGGAACGTTGAAGTTCTGCGAAAAACTGATGGAAAAGGCGGTGGGCTTCACCTCCCGTTTTGATTTCGCCATTC
ATGTGGCGCATGCCCGTTCCCGTGGTTTGCGTCGGCGCATGCCACCGGTGCTGCGTCGACGGGCTATTGATGCGCTGCTG
CAGGGACTCTGTTTTCACTATGATCCGCTGGCCAACCGCGTCCAGTGCTCCATCACCACGCTGGCCATTGAGTGCGGACT
GGCGACAGAGTCCGGTGCAGGAAAACTCTCCATCACCCGTGCCACCCGGGCCCTGACGTTCCTGTCAGAGCTGGGACTGA
TTACCTACCAGACGGAATATGACCCGCTTATCGGGTGCTACATTCCGAGCGACATCACGTTCACACCGGCTCTGTTTGCT
GCCCTTGATGTGTCTGAGGATGCAGTGGCAGCTGCGCGCCGCAGTCGTGTTGAATGGGAAAACAAACAGCGCAAAAAGCA
GGGGCTGGATACCCTGGGTATGGATGAGCTGATAGCGAAAGCCTGGCGTTTTGTGCGTGAGCGTTTCTGCAGTTACCAGA
CAGAGCTTAAGTCCCGTGGAATAAAACGTGCCCGTGCGCGTCGTGATGCGAACAGGGAACGTCAGGATATCGTCACCCTG
GTGAAACGGCAGCTGACGCGTGAAATCTCGGAAGGGCGCTTCTCTGCCAGTCGTGAGGCGGTAAAACGTGAAGTGGAGCG
TCGTGTGAAGGAGCGCATGATTCTGTCACGTAACCGCAATTACAGCCGGCTGGCCACCGCTTCCCCCTGA

Upstream 100 bases:

>100_bases
GAAACCGTATAGCCAACAATTCAGCTATGCGGGGAGTATAGTCATATGCCCGGAAAAGTTCAAGACTTCTTTCTGTGCTC
GCTCCTTCTGCGCATTGTAA

Downstream 100 bases:

>100_bases
AAGTGACCTCCTCAGAATAATCCGGCCTGCGCCGGAGGAATCCGCACGTCTGAAGCCCGCCAGTACAGAAAAAAACAGCA
CCACATACAAAAAACAACCT

Product: replication protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MQDGVTDLQQTYYRQVKNPNPVFTPRKGAGTLKFCEKLMEKAVGFTSRFDFAIHVAHARSRGLRRRMPPVLRRRAIDALL
QGLCFHYDPLANRVQCSITTLAIECGLATESGAGKLSITRATRALTFLSELGLITYQTEYDPLIGCYIPSDITFTPALFA
ALDVSEDAVAAARRSRVEWENKQRKKQGLDTLGMDELIAKAWRFVRERFCSYQTELKSRGIKRARARRDANRERQDIVTL
VKRQLTREISEGRFSASREAVKREVERRVKERMILSRNRNYSRLATASP

Sequences:

>Translated_289_residues
MQDGVTDLQQTYYRQVKNPNPVFTPRKGAGTLKFCEKLMEKAVGFTSRFDFAIHVAHARSRGLRRRMPPVLRRRAIDALL
QGLCFHYDPLANRVQCSITTLAIECGLATESGAGKLSITRATRALTFLSELGLITYQTEYDPLIGCYIPSDITFTPALFA
ALDVSEDAVAAARRSRVEWENKQRKKQGLDTLGMDELIAKAWRFVRERFCSYQTELKSRGIKRARARRDANRERQDIVTL
VKRQLTREISEGRFSASREAVKREVERRVKERMILSRNRNYSRLATASP
>Mature_289_residues
MQDGVTDLQQTYYRQVKNPNPVFTPRKGAGTLKFCEKLMEKAVGFTSRFDFAIHVAHARSRGLRRRMPPVLRRRAIDALL
QGLCFHYDPLANRVQCSITTLAIECGLATESGAGKLSITRATRALTFLSELGLITYQTEYDPLIGCYIPSDITFTPALFA
ALDVSEDAVAAARRSRVEWENKQRKKQGLDTLGMDELIAKAWRFVRERFCSYQTELKSRGIKRARARRDANRERQDIVTL
VKRQLTREISEGRFSASREAVKREVERRVKERMILSRNRNYSRLATASP

Specific function: This protein is essential for plasmid replication; it is involved in copy control functions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IncFII repA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017837
- InterPro:   IPR003446 [H]

Pfam domain/function: PF02387 IncFII_repA [H]

EC number: NA

Molecular weight: Translated: 33065; Mature: 33065

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDGVTDLQQTYYRQVKNPNPVFTPRKGAGTLKFCEKLMEKAVGFTSRFDFAIHVAHARS
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEHHHHHH
RGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECGLATESGAGKLSITR
HHHHHCCCHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHEEEECCCCCCCCCCEEHHH
ATRALTFLSELGLITYQTEYDPLIGCYIPSDITFTPALFAALDVSEDAVAAARRSRVEWE
HHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
NKQRKKQGLDTLGMDELIAKAWRFVRERFCSYQTELKSRGIKRARARRDANRERQDIVTL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VKRQLTREISEGRFSASREAVKREVERRVKERMILSRNRNYSRLATASP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQDGVTDLQQTYYRQVKNPNPVFTPRKGAGTLKFCEKLMEKAVGFTSRFDFAIHVAHARS
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEHHHHHH
RGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECGLATESGAGKLSITR
HHHHHCCCHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHEEEECCCCCCCCCCEEHHH
ATRALTFLSELGLITYQTEYDPLIGCYIPSDITFTPALFAALDVSEDAVAAARRSRVEWE
HHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
NKQRKKQGLDTLGMDELIAKAWRFVRERFCSYQTELKSRGIKRARARRDANRERQDIVTL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VKRQLTREISEGRFSASREAVKREVERRVKERMILSRNRNYSRLATASP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7003300; 6163994; 3041379; 3050127; 2580099; 3019092; 2445727; 8396115 [H]