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The map label for this gene is yjjM [H]

Identifier: 218692743

GI number: 218692743

Start: 5161688

End: 5162593

Strand: Reverse

Name: yjjM [H]

Synonym: ECED1_5225

Alternate gene names: 218692743

Gene position: 5162593-5161688 (Counterclockwise)

Preceding gene: 218692745

Following gene: 218692741

Centisome position: 99.1

GC content: 47.13

Gene sequence:

>906_bases
ATGAGTCGTTCGCAGAATTTACGTCATAGCGTCATAAATCAGGTGATTGAAGATATGGCGAGGGGCAATATTCCTTCTCC
GCTGCCTTCACAAAGCGGACTGGCAGAAATGTATAACATCAGTCGCACTACGGTACGCCACATACTCCAGCATTTAAGCG
CATGTGGCGTGCTCACCCTGGTGGGGAAAAATTATGTTATCGCCCGCAAACCCGAACAGAACGATGGATTTGATTGCATC
ACGGCCTCGCTGAAAGAGCAAAACCGTCTTTTCGAGCAGGCATTTTTCACCATGATTAACCTGCGCCAGTTACGCGCCGG
AGAAAGCTTTTCCGAACTTCAGCTGGCGCGAGCGGCAAGCGTCAGTCCGGTAGTGGTACGAGAATATCTTTTGAAATTCG
GTCGTTATAATCTTATTCAAAGCGAAAAGCGCGGCCAATGGAGCATGAAGCAGTTCGATCAATCCTACGCCGAGCAGCTG
TTTGAGCTACGCAAAATGCTCGAAACACATTCCCTGCAACACTTTCTCAACCTTCCCGATGATGACCCTCGCTGGCTGCA
AGCAAAAACCATGCTCGAACGCCACCGGACGCTGCGCGACAGCATTGGCAGCAACTTTCGAATGTTTTCTCAATTAGACC
GTGATTTTCATGCCATGCTGTTATCCGCTGCTGACAACATCTTTTTTAATCAATCACTTGAAATTATATCGGTGATCTTT
CATTTTCACTATCAATGGGATGAAAGCGATCTCAAACAGCGCAATATCATTGCTGTTGATGAACATATGACCATTCTCAG
CGCCCTGATTTGCCGTAGCGATTTAGATGCAATAACGGCGTTGCGAAACCATCTGGATACCGCCAAACAATCAATGATTC
GTTCCATCAGGCAACATCACCGATAA

Upstream 100 bases:

>100_bases
GTCGAATTTATAAGAGCGCCTGAATTTACCCATAAAATATGCGGATGATCGCGCATAAAAATGTTTTAAATCGGCTTTTA
ATGCCGGACTGGAGGGAAGA

Downstream 100 bases:

>100_bases
ATTAAGTACAGATTAAAAACATTGATTCTTGGTTTATATCACTATGTTGTATTAATGCAGTATTAATCCAGGCGATTGTT
CTGCCCATAAGGAAATACAT

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSRSQNLRHSVINQVIEDMARGNIPSPLPSQSGLAEMYNISRTTVRHILQHLSACGVLTLVGKNYVIARKPEQNDGFDCI
TASLKEQNRLFEQAFFTMINLRQLRAGESFSELQLARAASVSPVVVREYLLKFGRYNLIQSEKRGQWSMKQFDQSYAEQL
FELRKMLETHSLQHFLNLPDDDPRWLQAKTMLERHRTLRDSIGSNFRMFSQLDRDFHAMLLSAADNIFFNQSLEIISVIF
HFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDAITALRNHLDTAKQSMIRSIRQHHR

Sequences:

>Translated_301_residues
MSRSQNLRHSVINQVIEDMARGNIPSPLPSQSGLAEMYNISRTTVRHILQHLSACGVLTLVGKNYVIARKPEQNDGFDCI
TASLKEQNRLFEQAFFTMINLRQLRAGESFSELQLARAASVSPVVVREYLLKFGRYNLIQSEKRGQWSMKQFDQSYAEQL
FELRKMLETHSLQHFLNLPDDDPRWLQAKTMLERHRTLRDSIGSNFRMFSQLDRDFHAMLLSAADNIFFNQSLEIISVIF
HFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDAITALRNHLDTAKQSMIRSIRQHHR
>Mature_300_residues
SRSQNLRHSVINQVIEDMARGNIPSPLPSQSGLAEMYNISRTTVRHILQHLSACGVLTLVGKNYVIARKPEQNDGFDCIT
ASLKEQNRLFEQAFFTMINLRQLRAGESFSELQLARAASVSPVVVREYLLKFGRYNLIQSEKRGQWSMKQFDQSYAEQLF
ELRKMLETHSLQHFLNLPDDDPRWLQAKTMLERHRTLRDSIGSNFRMFSQLDRDFHAMLLSAADNIFFNQSLEIISVIFH
FHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDAITALRNHLDTAKQSMIRSIRQHHR

Specific function: May be a positive transcriptional regulator for yjjM and/or yjjN. Is essential for growth on L-galactonate as the sole carbon source [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48995005, Length=301, Percent_Identity=86.3787375415282, Blast_Score=543, Evalue=1e-156,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 35034; Mature: 34902

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSQNLRHSVINQVIEDMARGNIPSPLPSQSGLAEMYNISRTTVRHILQHLSACGVLTL
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGKNYVIARKPEQNDGFDCITASLKEQNRLFEQAFFTMINLRQLRAGESFSELQLARAAS
HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
VSPVVVREYLLKFGRYNLIQSEKRGQWSMKQFDQSYAEQLFELRKMLETHSLQHFLNLPD
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DDPRWLQAKTMLERHRTLRDSIGSNFRMFSQLDRDFHAMLLSAADNIFFNQSLEIISVIF
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
HFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDAITALRNHLDTAKQSMIRSIRQHH
HHHHCCCHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
R
C
>Mature Secondary Structure 
SRSQNLRHSVINQVIEDMARGNIPSPLPSQSGLAEMYNISRTTVRHILQHLSACGVLTL
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH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C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]