Click here to switch to the map view.

The map label for this gene is ddpA [H]

Identifier: 218692375

GI number: 218692375

Start: 4772671

End: 4774239

Strand: Reverse

Name: ddpA [H]

Synonym: ECED1_4811

Alternate gene names: 218692375

Gene position: 4774239-4772671 (Counterclockwise)

Preceding gene: 218692376

Following gene: 218692374

Centisome position: 91.64

GC content: 49.27

Gene sequence:

>1569_bases
ATGATTAAAAAACTATTACCTTTACTGGTTTTAAGCACAATTTCCGCCACAACCGTTGCCGCTACACCGCCGAATACGTT
GGTTGTAGCCCAGGGACTGGATGATATTGTGAGTCTGGACCCGGCAGAAGCTAATGAACTCTCAAGTATTCAGACTGTAC
CAAGTCTGTATCAACGCGTAGTACAACCGGACCGTAATGATCCGACGAAAATCACTCCGATTCTGGCGGAAAGTTGGCAG
GCTGACCCCGCAGCCAAAACGCTAACCATAAAACTGAAAAGCGATGCGAAATTTGCCTCTGGTAATCCGGTACGCCCGGA
AGATGTGATTTACTCTTATGTCCGGGCTGTCACACTGAATAAATCCGGTGCGTTTATTCTCAATGTGCTGGGATGGCAGC
CGGAAAATATCGCCAGCCAGTTGAAGAAAATCGATGACCATACCGTCCAGGTACAATGGAGTGCCGACGTCAGCCCGGCG
CTGGCACTGAATATTCTCTCCACACCAATCGCCTCAATTGTTGACGAGAAGCTGGTTGCGCCAAACGCCAAAAATAACGA
CTTTGGTAATGAATGGCTGAAGATGCATTCCGCTGGCAGCGGCGCGTTTAAAATGCGTACTTACCAACCGCATCAGGCCA
TCGTGATGGAAGCCAACGCCAGCTCACCAACCGGCGCCCCGAAACTGAAAAACGTCATCATCAAAAATGTTCCCGATCCG
GCAACGCGTCGCCTGCTGATCCAACAAGGTGATGCTGATATGGCTCGTGATCTGGGAGCCGATCAAATCGATGCATTACA
GGGTAAACCTGGCGTAAAAGTGATGAGCATTGCCTCCGCCGAACAGAACTACCTGGCCTTCAATACCGGTAACAAGGATA
ACCCGCTGATGAGTAATCCTGCGTTCTGGGAGGCCGCTCGCTGGTTGGTCGATTACGACGGCATCACCAAAAATCTCTTA
AAAGGACAATATTTTACCCATCAAAGTTTCCTGCCCGTGGGCTTTCCTGGAGCACTGGAAGAAACACCGTTTACCTTTAA
TCCAGCCAAAGCAAAAGAGATCCTCGCTAAAGCCGGAATCAAAGACCCGCACTTCACGCTTGATGTCGAAAATAAACCGC
CATTTATTACCATCGCGCAGTCAATTCAGGCCAGCTTTGCTCAGGGCGGTGTAAAAGTTGATTTGCTGCCAGCCGCAGGG
AGTCAGGTCTACTCTCGCGTTCGCGCCCACCAGCATCAGGGGGCCATTCGTATGTGGTTGCCTGATTATTTTGACGCACA
TTCCAACGCCAGCTCTTTCGCCTATAACGATGGCAAATCCAGCACCGTTGCCGGGTTAAACGGCTGGAAAATCCCGGAAC
TGAACAAAGAAACGCTGGCGGCCATCGCTGAACCTGATAGCGCTAAACGTCTTGATTTGTATAAGAAAATGCAACAAGAA
CTACAACGTAGTTCCCCGTATGTCTTTATTGATCAAGGCAAAACGCAAATTGTCATGCGTGATAATGTGCAGGGGTATCA
ACAAGGGTTGAATGCCGATATGGTCTGGTTTGATCAGGTAACCAAATAA

Upstream 100 bases:

>100_bases
CTCGTTCTATTAACGGGATATTTTGGCGCGATTAATGCAGCGAACCCCCGTCTGATAGCATATTAATAACCTCAAAGTAA
TTTCAGGGATTGGGAAGCAT

Downstream 100 bases:

>100_bases
CCCTGTATGCAACTCGCGTCCAGCCCTGTTACCGGGCGCGGTACCAGGGCTGGCCTGTATTGCAGGCCAGCCGCTGATTT
ATCACTGTATGGAAAGATCA

Product: putative ABC-type dipeptide transport system, periplasmic component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MIKKLLPLLVLSTISATTVAATPPNTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRVVQPDRNDPTKITPILAESWQ
ADPAAKTLTIKLKSDAKFASGNPVRPEDVIYSYVRAVTLNKSGAFILNVLGWQPENIASQLKKIDDHTVQVQWSADVSPA
LALNILSTPIASIVDEKLVAPNAKNNDFGNEWLKMHSAGSGAFKMRTYQPHQAIVMEANASSPTGAPKLKNVIIKNVPDP
ATRRLLIQQGDADMARDLGADQIDALQGKPGVKVMSIASAEQNYLAFNTGNKDNPLMSNPAFWEAARWLVDYDGITKNLL
KGQYFTHQSFLPVGFPGALEETPFTFNPAKAKEILAKAGIKDPHFTLDVENKPPFITIAQSIQASFAQGGVKVDLLPAAG
SQVYSRVRAHQHQGAIRMWLPDYFDAHSNASSFAYNDGKSSTVAGLNGWKIPELNKETLAAIAEPDSAKRLDLYKKMQQE
LQRSSPYVFIDQGKTQIVMRDNVQGYQQGLNADMVWFDQVTK

Sequences:

>Translated_522_residues
MIKKLLPLLVLSTISATTVAATPPNTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRVVQPDRNDPTKITPILAESWQ
ADPAAKTLTIKLKSDAKFASGNPVRPEDVIYSYVRAVTLNKSGAFILNVLGWQPENIASQLKKIDDHTVQVQWSADVSPA
LALNILSTPIASIVDEKLVAPNAKNNDFGNEWLKMHSAGSGAFKMRTYQPHQAIVMEANASSPTGAPKLKNVIIKNVPDP
ATRRLLIQQGDADMARDLGADQIDALQGKPGVKVMSIASAEQNYLAFNTGNKDNPLMSNPAFWEAARWLVDYDGITKNLL
KGQYFTHQSFLPVGFPGALEETPFTFNPAKAKEILAKAGIKDPHFTLDVENKPPFITIAQSIQASFAQGGVKVDLLPAAG
SQVYSRVRAHQHQGAIRMWLPDYFDAHSNASSFAYNDGKSSTVAGLNGWKIPELNKETLAAIAEPDSAKRLDLYKKMQQE
LQRSSPYVFIDQGKTQIVMRDNVQGYQQGLNADMVWFDQVTK
>Mature_522_residues
MIKKLLPLLVLSTISATTVAATPPNTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRVVQPDRNDPTKITPILAESWQ
ADPAAKTLTIKLKSDAKFASGNPVRPEDVIYSYVRAVTLNKSGAFILNVLGWQPENIASQLKKIDDHTVQVQWSADVSPA
LALNILSTPIASIVDEKLVAPNAKNNDFGNEWLKMHSAGSGAFKMRTYQPHQAIVMEANASSPTGAPKLKNVIIKNVPDP
ATRRLLIQQGDADMARDLGADQIDALQGKPGVKVMSIASAEQNYLAFNTGNKDNPLMSNPAFWEAARWLVDYDGITKNLL
KGQYFTHQSFLPVGFPGALEETPFTFNPAKAKEILAKAGIKDPHFTLDVENKPPFITIAQSIQASFAQGGVKVDLLPAAG
SQVYSRVRAHQHQGAIRMWLPDYFDAHSNASSFAYNDGKSSTVAGLNGWKIPELNKETLAAIAEPDSAKRLDLYKKMQQE
LQRSSPYVFIDQGKTQIVMRDNVQGYQQGLNADMVWFDQVTK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=508, Percent_Identity=29.3307086614173, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789966, Length=518, Percent_Identity=23.7451737451737, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787052, Length=489, Percent_Identity=23.721881390593, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787551, Length=523, Percent_Identity=22.9445506692161, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789887, Length=546, Percent_Identity=24.5421245421245, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57073; Mature: 57073

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKLLPLLVLSTISATTVAATPPNTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRV
CHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
VQPDRNDPTKITPILAESWQADPAAKTLTIKLKSDAKFASGNPVRPEDVIYSYVRAVTLN
HCCCCCCCCEECHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHEEEC
KSGAFILNVLGWQPENIASQLKKIDDHTVQVQWSADVSPALALNILSTPIASIVDEKLVA
CCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
PNAKNNDFGNEWLKMHSAGSGAFKMRTYQPHQAIVMEANASSPTGAPKLKNVIIKNVPDP
CCCCCCCCCHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHCCCCCH
ATRRLLIQQGDADMARDLGADQIDALQGKPGVKVMSIASAEQNYLAFNTGNKDNPLMSNP
HHHEEEEECCCHHHHHHCCCCHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCC
AFWEAARWLVDYDGITKNLLKGQYFTHQSFLPVGFPGALEETPFTFNPAKAKEILAKAGI
CHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
KDPHFTLDVENKPPFITIAQSIQASFAQGGVKVDLLPAAGSQVYSRVRAHQHQGAIRMWL
CCCCEEEEECCCCCEEEEHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCEEEEEC
PDYFDAHSNASSFAYNDGKSSTVAGLNGWKIPELNKETLAAIAEPDSAKRLDLYKKMQQE
CCHHCCCCCCCCCEECCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
LQRSSPYVFIDQGKTQIVMRDNVQGYQQGLNADMVWFDQVTK
HHHCCCEEEEECCCEEEEEECCCHHHHCCCCCCEEECCCCCC
>Mature Secondary Structure
MIKKLLPLLVLSTISATTVAATPPNTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRV
CHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
VQPDRNDPTKITPILAESWQADPAAKTLTIKLKSDAKFASGNPVRPEDVIYSYVRAVTLN
HCCCCCCCCEECHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHEEEC
KSGAFILNVLGWQPENIASQLKKIDDHTVQVQWSADVSPALALNILSTPIASIVDEKLVA
CCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
PNAKNNDFGNEWLKMHSAGSGAFKMRTYQPHQAIVMEANASSPTGAPKLKNVIIKNVPDP
CCCCCCCCCHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHCCCCCH
ATRRLLIQQGDADMARDLGADQIDALQGKPGVKVMSIASAEQNYLAFNTGNKDNPLMSNP
HHHEEEEECCCHHHHHHCCCCHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCC
AFWEAARWLVDYDGITKNLLKGQYFTHQSFLPVGFPGALEETPFTFNPAKAKEILAKAGI
CHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
KDPHFTLDVENKPPFITIAQSIQASFAQGGVKVDLLPAAGSQVYSRVRAHQHQGAIRMWL
CCCCEEEEECCCCCEEEEHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCEEEEEC
PDYFDAHSNASSFAYNDGKSSTVAGLNGWKIPELNKETLAAIAEPDSAKRLDLYKKMQQE
CCHHCCCCCCCCCEECCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
LQRSSPYVFIDQGKTQIVMRDNVQGYQQGLNADMVWFDQVTK
HHHCCCEEEEECCCEEEEEECCCHHHHCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]