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The map label for this gene is lpfA [H]

Identifier: 218691837

GI number: 218691837

Start: 4152577

End: 4153101

Strand: Reverse

Name: lpfA [H]

Synonym: ECED1_4231

Alternate gene names: 218691837

Gene position: 4153101-4152577 (Counterclockwise)

Preceding gene: 218691838

Following gene: 218691836

Centisome position: 79.72

GC content: 44.95

Gene sequence:

>525_bases
ATGAAAAAGGTTCTGTTTGCCTTATCTGCGCTTGCGCTGACCTCTACTTCCGTATTCGCAGCTGATGCAGGCGACGGTTC
TGTTAAATTTACCGGAGAGATTGTTGACGCCGCTTGTGTTGTGTCTCCAGACACTCAAAAACAAGAAGTTGTTCTGGGCC
AGGTGAACAAGTCTGTGTTTACCACTACTGGTGATAAATCCGCAGCAACTCCGTTCAAAATCAAACTGGAAAACTGCGAT
ATCTCCACTTTCAAAAATGTGGAGATCAGCTTTAACGGTGTTGGCGACGCAGACAACAGCAAACTGATTTCTGTAAGCAC
TGAACCAGGTGCCGCAACTGGCGTGGGTATTGGTATTTATGATAATACCAATACGCTGGTTGATCTGAATACCGGTAAAT
CTGCTACTGTCCTGAAAGAAGGCCAGACTGTTCTGTATTTTACCGCTAACTATGTCGCTACCAAAAATGCAGTAACCATC
GGTTACGGTAATGCCGAAGTCGACTTCAACCTGACTTACAACTAA

Upstream 100 bases:

>100_bases
TTCAGTAAAAATAATTTTATTTTTTAACGCCATTTGTATAATCTGCGACCCGTTGTATGAACAACATCAAGCATATTTAT
CTATATAAATGGAGTTATAA

Downstream 100 bases:

>100_bases
TCGATCCAGACGGAACGATTATCTCTCAATGGCAACAGATTATCTGTTGCCATTATTCACACCAATGACTCAGGGACCGA
ATCATGAAACGAATTAGCCT

Product: Long polar fimbria protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKKVLFALSALALTSTSVFAADAGDGSVKFTGEIVDAACVVSPDTQKQEVVLGQVNKSVFTTTGDKSAATPFKIKLENCD
ISTFKNVEISFNGVGDADNSKLISVSTEPGAATGVGIGIYDNTNTLVDLNTGKSATVLKEGQTVLYFTANYVATKNAVTI
GYGNAEVDFNLTYN

Sequences:

>Translated_174_residues
MKKVLFALSALALTSTSVFAADAGDGSVKFTGEIVDAACVVSPDTQKQEVVLGQVNKSVFTTTGDKSAATPFKIKLENCD
ISTFKNVEISFNGVGDADNSKLISVSTEPGAATGVGIGIYDNTNTLVDLNTGKSATVLKEGQTVLYFTANYVATKNAVTI
GYGNAEVDFNLTYN
>Mature_174_residues
MKKVLFALSALALTSTSVFAADAGDGSVKFTGEIVDAACVVSPDTQKQEVVLGQVNKSVFTTTGDKSAATPFKIKLENCD
ISTFKNVEISFNGVGDADNSKLISVSTEPGAATGVGIGIYDNTNTLVDLNTGKSATVLKEGQTVLYFTANYVATKNAVTI
GYGNAEVDFNLTYN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI87082421, Length=178, Percent_Identity=33.7078651685393, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI87081753, Length=162, Percent_Identity=38.2716049382716, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787781, Length=174, Percent_Identity=31.6091954022989, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI87081805, Length=177, Percent_Identity=30.5084745762712, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1790769, Length=130, Percent_Identity=35.3846153846154, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI87081804, Length=181, Percent_Identity=33.1491712707182, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1790773, Length=161, Percent_Identity=30.4347826086957, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1789422, Length=187, Percent_Identity=32.620320855615, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789531, Length=180, Percent_Identity=33.8888888888889, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1786938, Length=182, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786746, Length=176, Percent_Identity=28.9772727272727, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18154; Mature: 18154

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLFALSALALTSTSVFAADAGDGSVKFTGEIVDAACVVSPDTQKQEVVLGQVNKSVF
CCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCEEEEEECCCEEE
TTTGDKSAATPFKIKLENCDISTFKNVEISFNGVGDADNSKLISVSTEPGAATGVGIGIY
EECCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEE
DNTNTLVDLNTGKSATVLKEGQTVLYFTANYVATKNAVTIGYGNAEVDFNLTYN
CCCCEEEEECCCCCEEEEECCCEEEEEEECEEEECCEEEEEECCEEEEEEEEEC
>Mature Secondary Structure
MKKVLFALSALALTSTSVFAADAGDGSVKFTGEIVDAACVVSPDTQKQEVVLGQVNKSVF
CCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCEEEEEECCCEEE
TTTGDKSAATPFKIKLENCDISTFKNVEISFNGVGDADNSKLISVSTEPGAATGVGIGIY
EECCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEE
DNTNTLVDLNTGKSATVLKEGQTVLYFTANYVATKNAVTIGYGNAEVDFNLTYN
CCCCEEEEECCCCCEEEEECCCEEEEEEECEEEECCEEEEEECCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]