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The map label for this gene is ygiS [H]

Identifier: 218691319

GI number: 218691319

Start: 3605671

End: 3607278

Strand: Reverse

Name: ygiS [H]

Synonym: ECED1_3679

Alternate gene names: 218691319

Gene position: 3607278-3605671 (Counterclockwise)

Preceding gene: 218691320

Following gene: 218691318

Centisome position: 69.24

GC content: 51.93

Gene sequence:

>1608_bases
ATGTATACGCGAAATTTATTATGGCTGGTCAGCCTGGTAAGTGCGGCTCCTCTCTACGCTGCTGACGTTCCCGCCAACAC
ACCGCTCGCCCCGCAACAAGTCTTTCGTTACAACAATCATAGCGACCCAGGCACGCTCGACCCGCAAAAGGTAGAGGAGA
ATACTGCCGCGCAGATTGTGCTGGATCTGTTTGAAGGTCTGGTATGGATGGACGGTGAAGGCCAGGTGCAGCCCGCTCAG
GCTGAACGCTGGGAGATACTTGACGGCGGCAAGCGCTATATTTTCCATCTGCGTAGCGGTTTGCAGTGGTCAGACGGTCA
GCCTCTGACGGCAGAGGATTTTGTCCTCGGCTGGCAGCGCGCGGTTGACCCGAAAACGGCAAGCCCTTTTGCTGGCTATC
TGGCACAGGCGCACATTAACAATGCCGCGGCTATTGTTGCGGGTAAAGCAGATGTTACATCGCTGGGTGTCAAAGCGACG
GATGATCGTACTCTTGAAGTTACGCTTGAGCAGCCAGTTCCTTGGTTCACGACGATGCTCGCCTGGCCGACGCTGTTCCC
GGTTCCTCATCATGTCATCGCTAAACATGGCGATAGCTGGAGTAAGCCAGAGAACATGGTTTACAACGGTGCCTTTGTGC
TTGATAAATGGGTAGTTAACGAAAAGATTACTGCACGCAAAAATCCAAAGTACCGCGATGCGCAACATACAGTATTGCAA
CAGGTTGAGTATCTGGCGCTGGATAATTCGGTCACCGGCTATAACCGCTATCGCGCGGGAGAGGTCGATCTCACCTGGGT
TCCGGCGCAGCAAATTCCCGCCATTGAAAAATCACTGCCTGGCGAGCTACGAATTATCCCGCGTCTGAACAGCGAATATT
ACAACTTTAACCTTGAGAAACCGCCATTTAACGATGTGCGGGTGCGTCGGGCGCTATATCTTACGGTTGATCGACAGCTT
ATTGCGCAAAAGGTACTGGGGTTGAGAACGCCCGCAACCACGCTGACGCCGCCAGAGGTAAAAGGCTTTAGCGCGACGAC
GTTCGATGAACTGCAAAAGCCAATGAGTGAGCGTGTCGCGATGGCAAAAGTCTTGCTGAAACAGGCGGGATACGACGCCT
CTCATCCGCTACGCTTTGAGCTGTTCTACAACAAGTACGATCTGCATGAAAAGACCGCGATAGCGTTGTCTTCCGAATGG
AAAAAATGGCTGGGTGCACAGGTGACGCTGCGCACAATGGAGTGGAAAACCTATCTTGATGCCCGACGAGCCGGTGATTT
TATGCTGTCTCGGCAGTCGTGGGATGCGACGTACAATGATGCCTCCAGCTTCCTGAACACGCTCAAAAGCGATAGTGAAG
AAAACGTCGGTCACTGGAAAAATGCGCAGTATGACGCCTTACTAAACCAGGCCACGCAGATCACTGATGCAACAAAGCGT
AATGCGTTGTATCAGCAGGCAGAAGTGATCATCAACCAGCAGGCACCGCTGATTCCTATCTACTATCAGCCGTTAATCAA
ACTATTTAAACCCTACGTTGGCGGTTTTCCGCTGCATAATCCCCAGGATTATGTCTACAGCAAAGAGTTGTATATCAAGG
CACATTGA

Upstream 100 bases:

>100_bases
CTTTACCGGAGTGTGAGCCAAATCACTCGCGATAAGTTTGAGCAAACAATGCCACAGGCGTATTGTTGTCGGGCTTATAA
TTTCTCCGGTAAGGAATACC

Downstream 100 bases:

>100_bases
TGCCTTTATCGCCGTCGGAGCACGTCCGGCGGCGCTATTCACGCTGATCTCCTGTGACTCGACGCGGCAGATAATGTAGT
ATCTCCGGCAATATTGCCCC

Product: putative binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MYTRNLLWLVSLVSAAPLYAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIVLDLFEGLVWMDGEGQVQPAQ
AERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQRAVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKAT
DDRTLEVTLEQPVPWFTTMLAWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDKWVVNEKITARKNPKYRDAQHTVLQ
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGELRIIPRLNSEYYNFNLEKPPFNDVRVRRALYLTVDRQL
IAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKVLLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEW
KKWLGAQVTLRTMEWKTYLDARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKR
NALYQQAEVIINQQAPLIPIYYQPLIKLFKPYVGGFPLHNPQDYVYSKELYIKAH

Sequences:

>Translated_535_residues
MYTRNLLWLVSLVSAAPLYAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIVLDLFEGLVWMDGEGQVQPAQ
AERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQRAVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKAT
DDRTLEVTLEQPVPWFTTMLAWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDKWVVNEKITARKNPKYRDAQHTVLQ
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGELRIIPRLNSEYYNFNLEKPPFNDVRVRRALYLTVDRQL
IAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKVLLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEW
KKWLGAQVTLRTMEWKTYLDARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKR
NALYQQAEVIINQQAPLIPIYYQPLIKLFKPYVGGFPLHNPQDYVYSKELYIKAH
>Mature_535_residues
MYTRNLLWLVSLVSAAPLYAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIVLDLFEGLVWMDGEGQVQPAQ
AERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQRAVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKAT
DDRTLEVTLEQPVPWFTTMLAWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDKWVVNEKITARKNPKYRDAQHTVLQ
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGELRIIPRLNSEYYNFNLEKPPFNDVRVRRALYLTVDRQL
IAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKVLLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEW
KKWLGAQVTLRTMEWKTYLDARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKR
NALYQQAEVIINQQAPLIPIYYQPLIKLFKPYVGGFPLHNPQDYVYSKELYIKAH

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=535, Percent_Identity=99.4392523364486, Blast_Score=1097, Evalue=0.0,
Organism=Escherichia coli, GI1787495, Length=530, Percent_Identity=44.3396226415094, Blast_Score=450, Evalue=1e-127,
Organism=Escherichia coli, GI87081878, Length=529, Percent_Identity=42.34404536862, Blast_Score=404, Evalue=1e-113,
Organism=Escherichia coli, GI1789966, Length=512, Percent_Identity=25.9765625, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1787052, Length=491, Percent_Identity=24.6435845213849, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI1787762, Length=527, Percent_Identity=23.719165085389, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1789887, Length=480, Percent_Identity=23.125, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787551, Length=541, Percent_Identity=22.735674676525, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60757; Mature: 60757

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTRNLLWLVSLVSAAPLYAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIV
CCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
LDLFEGLVWMDGEGQVQPAQAERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQR
HHHHHCEEEECCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
AVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKATDDRTLEVTLEQPVPWFTTML
CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHCCEEECCCCEEEEEECCCCCHHHHHH
AWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDKWVVNEKITARKNPKYRDAQHTVLQ
HHHHHCCCCHHHHHCCCCCCCCCCCEEECCEEEEEHHHHCCCHHCCCCCCCCHHHHHHHH
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGELRIIPRLNSEYYNFNLEK
HHHHHHCCCCCCCCCCEECCCEEEEEECHHHCCHHHHCCCCCEEEEEECCCCEEEEECCC
PPFNDVRVRRALYLTVDRQLIAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVA
CCCCHHHEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
MAKVLLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTMEWKTYLD
HHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHEEEHHHHHHHHCCCEEEEEEEHHHHHHH
ARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKR
HHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
NALYQQAEVIINQQAPLIPIYYQPLIKLFKPYVGGFPLHNPQDYVYSKELYIKAH
HHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC
>Mature Secondary Structure
MYTRNLLWLVSLVSAAPLYAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIV
CCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
LDLFEGLVWMDGEGQVQPAQAERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQR
HHHHHCEEEECCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
AVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKATDDRTLEVTLEQPVPWFTTML
CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHCCEEECCCCEEEEEECCCCCHHHHHH
AWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDKWVVNEKITARKNPKYRDAQHTVLQ
HHHHHCCCCHHHHHCCCCCCCCCCCEEECCEEEEEHHHHCCCHHCCCCCCCCHHHHHHHH
QVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGELRIIPRLNSEYYNFNLEK
HHHHHHCCCCCCCCCCEECCCEEEEEECHHHCCHHHHCCCCCEEEEEECCCCEEEEECCC
PPFNDVRVRRALYLTVDRQLIAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVA
CCCCHHHEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
MAKVLLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTMEWKTYLD
HHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHEEEHHHHHHHHCCCEEEEEEEHHHHHHH
ARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKR
HHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
NALYQQAEVIINQQAPLIPIYYQPLIKLFKPYVGGFPLHNPQDYVYSKELYIKAH
HHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]