Click here to switch to the map view.

The map label for this gene is 218691123

Identifier: 218691123

GI number: 218691123

Start: 3406087

End: 3406608

Strand: Direct

Name: 218691123

Synonym: ECED1_3465

Alternate gene names: NA

Gene position: 3406087-3406608 (Clockwise)

Preceding gene: 218691122

Following gene: 218691124

Centisome position: 65.38

GC content: 55.36

Gene sequence:

>522_bases
ATGGTTAAAGACGGGCAAAGGGAGAAACGGCAGGCGGGCATGCTGCAGGGCGGCCCACTGTCGCCGTTACTGTCGAACAT
CCTGCTGGATGAACTGGATAAAGAACTGGAGCGTCGTGGACACAGCTTCTGCCGCTACGCAGACGACTGCAACATCTACG
TAAGCAGCCGGAAAGCGGGCGACCATCTGCTGAAGAACATCAGGGCGTTCGTGGAGAACAAACTGAAGGTGAATGAGAAG
AAGAGCGCGGTGGCGCGCCCGTGGGATCGGAAGTTCCTCGGGTACAGTGTGACATGGCACAAACAGGCGAAGCTGAAGAT
AGCCCTGACGAGCGTGAACAGGCTGAAGGAGAAAGTCCACAGTCTGACGACGGGAAACCGGAGCAAATCAGTGAAAGCGA
CAATCAATGCTCTGACACCAGTGCTGTGTGGATGGATAAGCTACTTCAGGCTGACGGAAGTCAGAGGAGTGCTGGAGGAG
CTGGATGGCTGGATCAAACGGAAACTGCGTTGCTTGTTGTAG

Upstream 100 bases:

>100_bases
CTTCGACCGGGTGGATCACAGACTCCTGATGACGCGTCTGGCCAGAACGATAAAGGACAGGCGGGTGCTGTGACTGATAC
GCCGCTACCTGAAAGCGGAA

Downstream 100 bases:

>100_bases
CGGCAGTGGAAGAGACCGCTAACCCGGGCAAAGAACCTGCAAAGAGCAGGACTGAGTAAGGACAGGGCAATGATCTCTGC
GTACAACAACCACGGGCCAT

Product: putative maturase-related protein

Products: NA

Alternate protein names: Reverse Transcriptase/Maturase; Reverse Transcriptase/Maturase Family Protein; Reverse Transcriptase; Group II Intron-Encoding Maturase; Recombinase; GBSi1 Group II Intron Maturase; Retron-Type Reverse Transcriptase; Maturase; Group II Intron Maturase-Specific Domain-Containing Protein; Reverse Transcriptase/Maturase Group FT II Introns; Group II Intron-Encoding Maturase Variant; Integron/Retron-Type RNA-Directed DNA Polymerase; Reverse Transcriptase Family Protein; Group II Intron Maturase; Group II Intron-Encoded Protein; Transposase; Reverse Transcriptasematurase Protein; Group II Intron Reverse Transcriptase/Maturase; Na-Directed DNA Polymerase; Regulatory Protein GntR; Ecombinase For Bh.Int; Group II Intron-Encoded Maturase

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MVKDGQREKRQAGMLQGGPLSPLLSNILLDELDKELERRGHSFCRYADDCNIYVSSRKAGDHLLKNIRAFVENKLKVNEK
KSAVARPWDRKFLGYSVTWHKQAKLKIALTSVNRLKEKVHSLTTGNRSKSVKATINALTPVLCGWISYFRLTEVRGVLEE
LDGWIKRKLRCLL

Sequences:

>Translated_173_residues
MVKDGQREKRQAGMLQGGPLSPLLSNILLDELDKELERRGHSFCRYADDCNIYVSSRKAGDHLLKNIRAFVENKLKVNEK
KSAVARPWDRKFLGYSVTWHKQAKLKIALTSVNRLKEKVHSLTTGNRSKSVKATINALTPVLCGWISYFRLTEVRGVLEE
LDGWIKRKLRCLL
>Mature_173_residues
MVKDGQREKRQAGMLQGGPLSPLLSNILLDELDKELERRGHSFCRYADDCNIYVSSRKAGDHLLKNIRAFVENKLKVNEK
KSAVARPWDRKFLGYSVTWHKQAKLKIALTSVNRLKEKVHSLTTGNRSKSVKATINALTPVLCGWISYFRLTEVRGVLEE
LDGWIKRKLRCLL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19820; Mature: 19820

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKDGQREKRQAGMLQGGPLSPLLSNILLDELDKELERRGHSFCRYADDCNIYVSSRKAG
CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
DHLLKNIRAFVENKLKVNEKKSAVARPWDRKFLGYSVTWHKQAKLKIALTSVNRLKEKVH
HHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHCCCEEEEECCCEEEHHHHHHHHHHHHHH
SLTTGNRSKSVKATINALTPVLCGWISYFRLTEVRGVLEELDGWIKRKLRCLL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVKDGQREKRQAGMLQGGPLSPLLSNILLDELDKELERRGHSFCRYADDCNIYVSSRKAG
CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
DHLLKNIRAFVENKLKVNEKKSAVARPWDRKFLGYSVTWHKQAKLKIALTSVNRLKEKVH
HHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHCCCEEEEECCCEEEHHHHHHHHHHHHHH
SLTTGNRSKSVKATINALTPVLCGWISYFRLTEVRGVLEELDGWIKRKLRCLL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA