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The map label for this gene is ykfC [C]

Identifier: 218691122

GI number: 218691122

Start: 3405520

End: 3406059

Strand: Direct

Name: ykfC [C]

Synonym: ECED1_3464

Alternate gene names: 218691122

Gene position: 3405520-3406059 (Clockwise)

Preceding gene: 218691121

Following gene: 218691123

Centisome position: 65.37

GC content: 58.52

Gene sequence:

>540_bases
ATGATGATTAATGAAGCACAAGCGCAGGCCACTGCGACCAGCGGCAGAGGAGACGGACAGTATCCGTCAGGGCTGCATGA
TGGCGCTGAAATCAGCACGGCGGCGGGTGGGCAAACGAAAGCGGAAGTGCCGCTGACGATGGAAGCGGTGATAACGAGAG
AAAACCTGATGCTGGCTTATCAGCGCGTGGTGGAAAACAAAGGCACGGCGGGGGTGGATAACCTCAGCGTGGCGGAGTTG
AAACCGTGGCTGAAGAAGAACTGGCGCAGCGTCAGGCAGGCATTGATTGACGGAAACTACCAGCCGCGGACAATACGCCG
GATGGATATCCCGAAGCCGGATGGCGGCGTGAGAACCTCAGGCATCCCGACGGTGGTGGACAGGCTTATCCAGCAGGCGG
TGCAACAGGCACAGCGTTACATACGGGGTGGCAAACGGTGGGTGGTGGATATGGATCTGGAGAAGTTCTTCGACCGGGTG
GATCACAGACTCCTGATGACGCGTCTGGCCAGAACGATAAAGGACAGGCGGGTGCTGTGA

Upstream 100 bases:

>100_bases
GGATGGGGCGGCAGAAGTCAGCCGACGCCGTAGTAGTGCTGCAAAACCGGCAGCATGAAGGGCCGAACATGATTAACTGT
GATTAGGACATCCGAACCCG

Downstream 100 bases:

>100_bases
CTGATACGCCGCTACCTGAAAGCGGAAATGGTTAAAGACGGGCAAAGGGAGAAACGGCAGGCGGGCATGCTGCAGGGCGG
CCCACTGTCGCCGTTACTGT

Product: putative maturase-related protein

Products: NA

Alternate protein names: Group II Intron-Encoding Maturase; Reverse Transcriptase; Reverse Transcriptase/Maturase; GBSi1 Group II Intron Maturase; Retron-Type Reverse Transcriptase; Maturase; Reverse Transcriptase/Maturase Family Protein; Group II Intron Reverse Transcriptase/Maturase; Reverse Transcriptase Fragment; Reverse Transcriptase/Maturase Group FT II Introns; Recombinase; Group II Intron-Encoded Protein LtrA; Integron/Retron-Type RNA-Directed DNA Polymerase; Reverse Transcriptase Family Protein; Group II Intron Maturase; Maturase-Related Protein; Group II Intron-Encoded Protein; Reverse Transcriptase/Maturase Protein; Transposase; Phage Reverse Transcriptase/Maturase Protein; Retron-Type Reverse Transcriptase-Like; Group II Intron Reverse Transcriptase Maturase; Reverse Transcriptasematurase Protein; Na-Directed DNA Polymerase; Regulatory Protein GntR; Retron-Type Reverse Transcriptase-Like Protein; Ecombinase For Bh.Int; Group II Intron-Encoded Maturase; GroupII Intron-Associated Maturase

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MMINEAQAQATATSGRGDGQYPSGLHDGAEISTAAGGQTKAEVPLTMEAVITRENLMLAYQRVVENKGTAGVDNLSVAEL
KPWLKKNWRSVRQALIDGNYQPRTIRRMDIPKPDGGVRTSGIPTVVDRLIQQAVQQAQRYIRGGKRWVVDMDLEKFFDRV
DHRLLMTRLARTIKDRRVL

Sequences:

>Translated_179_residues
MMINEAQAQATATSGRGDGQYPSGLHDGAEISTAAGGQTKAEVPLTMEAVITRENLMLAYQRVVENKGTAGVDNLSVAEL
KPWLKKNWRSVRQALIDGNYQPRTIRRMDIPKPDGGVRTSGIPTVVDRLIQQAVQQAQRYIRGGKRWVVDMDLEKFFDRV
DHRLLMTRLARTIKDRRVL
>Mature_179_residues
MMINEAQAQATATSGRGDGQYPSGLHDGAEISTAAGGQTKAEVPLTMEAVITRENLMLAYQRVVENKGTAGVDNLSVAEL
KPWLKKNWRSVRQALIDGNYQPRTIRRMDIPKPDGGVRTSGIPTVVDRLIQQAVQQAQRYIRGGKRWVVDMDLEKFFDRV
DHRLLMTRLARTIKDRRVL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20085; Mature: 20085

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMINEAQAQATATSGRGDGQYPSGLHDGAEISTAAGGQTKAEVPLTMEAVITRENLMLAY
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
QRVVENKGTAGVDNLSVAELKPWLKKNWRSVRQALIDGNYQPRTIRRMDIPKPDGGVRTS
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
GIPTVVDRLIQQAVQQAQRYIRGGKRWVVDMDLEKFFDRVDHRLLMTRLARTIKDRRVL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMINEAQAQATATSGRGDGQYPSGLHDGAEISTAAGGQTKAEVPLTMEAVITRENLMLAY
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
QRVVENKGTAGVDNLSVAELKPWLKKNWRSVRQALIDGNYQPRTIRRMDIPKPDGGVRTS
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
GIPTVVDRLIQQAVQQAQRYIRGGKRWVVDMDLEKFFDRVDHRLLMTRLARTIKDRRVL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA