Click here to switch to the map view.

The map label for this gene is yfcU [H]

Identifier: 218690497

GI number: 218690497

Start: 2738962

End: 2741616

Strand: Reverse

Name: yfcU [H]

Synonym: ECED1_2801

Alternate gene names: 218690497

Gene position: 2741616-2738962 (Counterclockwise)

Preceding gene: 218690498

Following gene: 218690496

Centisome position: 52.63

GC content: 54.46

Gene sequence:

>2655_bases
ATGTGTATGCCTAATCACTCAAATTTTCGGCTGCGGGGAATCGCCTGCTATATTGCGCTGGCAATCTCTGGTGGGTCAGT
CAATGCATGGGCTGATGATTCAATTCAATTTGACCCCCGTTTCCTTGAGTTAAAGGGCGATACGAAAATTGATCTCGGTA
AGTTTTCAAAAAAAGGGTATGTCGACGCGGGTAAATATAATTTACGTGTATTTATAAATAAACACCCCCTTTCTGATGAA
TACGACATTAACTGGTACGTCTCTGAAAACGATCCAACAAAAAACTATGCCTGCCTGACACCTGAGTTAGTGGCGGCGCT
GGGGCTGAAAGAAGGGATAGCAAAAAGCCTGCAGTGGACGCACAACGATGAATGCCTTAAACCGGGGCAATTAGACGGGA
TGGAAGTCGAGAATGATTTAAGCCAGTCGGCGTTGCTGCTGACAGTGCCACAGGCTTACCTCGAATATACCAGCAGCGAC
TGGGACCCTCCCTCACGTTGGGACGACGGTATTCCTGGCCTGATTGCCGACTACAGCCTCAATGCGCAAACTCGCCACCA
GGAGCAGGGGGGCGAGGACTCACATGATATCAGCGGCAACGGTACCGTTGGGGCGAACCTGGGGGCATGGCGTTTCCGTG
CAGACTGGCAAAGTGATTATCAGCACACCCGCAGCAACGATGACGACGATGACAGCAGTAACAGCACAACGAGTAAACAC
TGGGACTGGAGTCGTTATTACGCCTGGCGAGCCTTGCCCTCTTTAAAAGCGAAGCTGTCGCTGGGGGAAGATTATCTCAA
TTCCGATATTTTCGACGGCTTTAACTATATCGGCAGCAGCGTCAGCACCGATGACCAGATGCTGCCGCCCAACCTGCGCG
GCTATGCACCGGATGTTTCCGGCGTGGCGCACAGCAGTGCAAAAGTCACCATTAGCCAGATGGGCCGGGTACTTTACGAA
ACCCAGGTTCCAGCCGGGCCATTCCGCATTCAGGATATCGGCGACTCCGTCTCCGGCACACTGCACGTCCGCGTTGAAGA
ACAGAATGGTCAGGTGCAGGAATATGACGTTACGACCGCATCTATGCCATTCCTCACGCGCCAGGGGCAGGTGCGTTACA
AAGTGATGATGGGGCGTCCGGAAGACTGGAACCACAAGACCGAAGGCGGCTTTTTCTCCGGCGGAGAAGCGTCATGGGGG
GTGGCAGATGGCTGGTCGCTCTACGGTGGTGCGCTGGCAGATAAACACTATCAGTCGGCGGCGATGGGGGTGGGGCGCGA
CCTCGCACAGTTTGGCGCGCTGGCGTTCGATGTGACTCACTCGCACGTCAACCTGGATCATGACAGCGCATATGGCAAAG
GAAAACTGGACGGCAACTCCTTTCGCGTGAGCTATGCCAAAGACTTTGACGAACTCAACAGCCGCGTCACCTTTGCAGGC
TACCGTTTTTCTGAAAAGAACTTCATGACCATGAGCGAGTATCTGGACGCGAACCAGTCAGACATGGCGCGGACCGGTAA
CGACAAAGAGATGTATACGATCACCTATAACCAGAACTTTGCCGCTGCGGGTGTCTCGATCTATCTCAACTACTCCCATC
GTACTTACTGGGATCGCCCGGAACAGACAAACTATAACCTGATGTTTTCCCACTATTTTAATATGGGGAGCATTCGCAAC
ATGAGCATCTCGGTGACCGGCTATCGCTACGAATATGACGATAATGCGGATAAGGGGATGTACCTCAGTATGAGCATTCC
GTGGAGCGACAGCAGCACCGTGACCTACAACGGTTCCTACGGCAGCGGGTCGGACAGCAGCCAGGTCGGTTACTTTAAGC
GCGTCGATGACGCAACGCACTACCAGGTTAACGTTGGCACCAGCGAGCAGCACGGCAGCGCGGATGGTTATCTGAGCCAC
GACGGTTCGCTGGCGAAGGTTGATCTCAGCGCCAACTACCATGAAGGGGAATACCGTTCGGCGGGGATCGCCTTACAGGG
CGGGGCAACGCTGACCGCGCATGGTGGGGCGCTGCACCGTACCCAGAACATGGGCGGCACGCGCCTGCTGATTGACGCCG
ACGGGATTGCCAACGTGCCGGTCGAAAGCAACGGCGCGCCGGTGTACACCAATATGTTTGGCAAGGCGGTGGTCGCCGAT
ATTAACAACTACTATCGCAATCAGGCGTATATCGATTTAAACAACCTGCCGGAAGATGCGGAAGCCACCCAGTCGGTGGT
GCAGGCGACTCTGACGGAAGGCGCAATCGGCTATCGTAAATTCAAAGTGATCAGCGGGCAAAAAGCGATGGCGGTACTGC
GGTTACGTGACGGTAGCTACCCGCCGTTTGGCGCGGAAGTGAAAAACGACGAGCAGCAGCAGGTTGGCATTGTGGATGAT
GAAGGCAATGTCTATCTGGCGGGGGTCAATGCGGACGAGCATATGATGGTGTTCTGGGAAGGCAGCGCACAATGCGAGAT
CGTATTGCCGAAGCCGCTACCTGCCGATTTGTTCAGCGGCCTGTTGTTGCCGTGTGAACAAAAGGGAACGGCAGCCCCTG
ATTCTTCAGCGCCAGAAATTAAGCCTGTTATTCAGGGCCAGACGCGGCAAGTCACACCAACGGAAGCGCCGAGGTCAATT
TCAGCAACTCAATAA

Upstream 100 bases:

>100_bases
CCACATTCCAGATTACCTATCTCTGATGTGACAACCCCACAGCGTTCTGCTGTGGGGTTATTCAACACGCAACAGATTTA
CGACTGTTTCACAAACGGAT

Downstream 100 bases:

>100_bases
TCTGATTAAGGAACGATCAATGTCTTATAAATTATCCTGTCCAATGCTCGTCAGCACAGCGCTGATGGCACAGCTTACCA
CCGCCAGCCTGACGGCGCAT

Product: putative export usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 884; Mature: 884

Protein sequence:

>884_residues
MCMPNHSNFRLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGYVDAGKYNLRVFINKHPLSDE
YDINWYVSENDPTKNYACLTPELVAALGLKEGIAKSLQWTHNDECLKPGQLDGMEVENDLSQSALLLTVPQAYLEYTSSD
WDPPSRWDDGIPGLIADYSLNAQTRHQEQGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDDDDSSNSTTSKH
WDWSRYYAWRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVSGVAHSSAKVTISQMGRVLYE
TQVPAGPFRIQDIGDSVSGTLHVRVEEQNGQVQEYDVTTASMPFLTRQGQVRYKVMMGRPEDWNHKTEGGFFSGGEASWG
VADGWSLYGGALADKHYQSAAMGVGRDLAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFAG
YRFSEKNFMTMSEYLDANQSDMARTGNDKEMYTITYNQNFAAAGVSIYLNYSHRTYWDRPEQTNYNLMFSHYFNMGSIRN
MSISVTGYRYEYDDNADKGMYLSMSIPWSDSSTVTYNGSYGSGSDSSQVGYFKRVDDATHYQVNVGTSEQHGSADGYLSH
DGSLAKVDLSANYHEGEYRSAGIALQGGATLTAHGGALHRTQNMGGTRLLIDADGIANVPVESNGAPVYTNMFGKAVVAD
INNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFKVISGQKAMAVLRLRDGSYPPFGAEVKNDEQQQVGIVDD
EGNVYLAGVNADEHMMVFWEGSAQCEIVLPKPLPADLFSGLLLPCEQKGTAAPDSSAPEIKPVIQGQTRQVTPTEAPRSI
SATQ

Sequences:

>Translated_884_residues
MCMPNHSNFRLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGYVDAGKYNLRVFINKHPLSDE
YDINWYVSENDPTKNYACLTPELVAALGLKEGIAKSLQWTHNDECLKPGQLDGMEVENDLSQSALLLTVPQAYLEYTSSD
WDPPSRWDDGIPGLIADYSLNAQTRHQEQGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDDDDSSNSTTSKH
WDWSRYYAWRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVSGVAHSSAKVTISQMGRVLYE
TQVPAGPFRIQDIGDSVSGTLHVRVEEQNGQVQEYDVTTASMPFLTRQGQVRYKVMMGRPEDWNHKTEGGFFSGGEASWG
VADGWSLYGGALADKHYQSAAMGVGRDLAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFAG
YRFSEKNFMTMSEYLDANQSDMARTGNDKEMYTITYNQNFAAAGVSIYLNYSHRTYWDRPEQTNYNLMFSHYFNMGSIRN
MSISVTGYRYEYDDNADKGMYLSMSIPWSDSSTVTYNGSYGSGSDSSQVGYFKRVDDATHYQVNVGTSEQHGSADGYLSH
DGSLAKVDLSANYHEGEYRSAGIALQGGATLTAHGGALHRTQNMGGTRLLIDADGIANVPVESNGAPVYTNMFGKAVVAD
INNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFKVISGQKAMAVLRLRDGSYPPFGAEVKNDEQQQVGIVDD
EGNVYLAGVNADEHMMVFWEGSAQCEIVLPKPLPADLFSGLLLPCEQKGTAAPDSSAPEIKPVIQGQTRQVTPTEAPRSI
SATQ
>Mature_884_residues
MCMPNHSNFRLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGYVDAGKYNLRVFINKHPLSDE
YDINWYVSENDPTKNYACLTPELVAALGLKEGIAKSLQWTHNDECLKPGQLDGMEVENDLSQSALLLTVPQAYLEYTSSD
WDPPSRWDDGIPGLIADYSLNAQTRHQEQGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDDDDSSNSTTSKH
WDWSRYYAWRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVSGVAHSSAKVTISQMGRVLYE
TQVPAGPFRIQDIGDSVSGTLHVRVEEQNGQVQEYDVTTASMPFLTRQGQVRYKVMMGRPEDWNHKTEGGFFSGGEASWG
VADGWSLYGGALADKHYQSAAMGVGRDLAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFAG
YRFSEKNFMTMSEYLDANQSDMARTGNDKEMYTITYNQNFAAAGVSIYLNYSHRTYWDRPEQTNYNLMFSHYFNMGSIRN
MSISVTGYRYEYDDNADKGMYLSMSIPWSDSSTVTYNGSYGSGSDSSQVGYFKRVDDATHYQVNVGTSEQHGSADGYLSH
DGSLAKVDLSANYHEGEYRSAGIALQGGATLTAHGGALHRTQNMGGTRLLIDADGIANVPVESNGAPVYTNMFGKAVVAD
INNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFKVISGQKAMAVLRLRDGSYPPFGAEVKNDEQQQVGIVDD
EGNVYLAGVNADEHMMVFWEGSAQCEIVLPKPLPADLFSGLLLPCEQKGTAAPDSSAPEIKPVIQGQTRQVTPTEAPRSI
SATQ

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=847, Percent_Identity=35.1829988193625, Blast_Score=489, Evalue=1e-139,
Organism=Escherichia coli, GI1790772, Length=895, Percent_Identity=27.0391061452514, Blast_Score=291, Evalue=8e-80,
Organism=Escherichia coli, GI1787172, Length=865, Percent_Identity=27.9768786127168, Blast_Score=284, Evalue=2e-77,
Organism=Escherichia coli, GI1789533, Length=836, Percent_Identity=28.4688995215311, Blast_Score=275, Evalue=9e-75,
Organism=Escherichia coli, GI1786744, Length=879, Percent_Identity=25.2559726962457, Blast_Score=249, Evalue=7e-67,
Organism=Escherichia coli, GI1786332, Length=860, Percent_Identity=25.9302325581395, Blast_Score=245, Evalue=1e-65,
Organism=Escherichia coli, GI1788427, Length=780, Percent_Identity=26.1538461538462, Blast_Score=202, Evalue=7e-53,
Organism=Escherichia coli, GI1789610, Length=678, Percent_Identity=23.3038348082596, Blast_Score=120, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 97468; Mature: 97468

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCMPNHSNFRLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGY
CCCCCCCCEEEEEEEEEEEEEEECCCEECCCCCCEEECCEEEEECCCCEEECCCCCCCCC
VDAGKYNLRVFINKHPLSDEYDINWYVSENDPTKNYACLTPELVAALGLKEGIAKSLQWT
EECCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCC
HNDECLKPGQLDGMEVENDLSQSALLLTVPQAYLEYTSSDWDPPSRWDDGIPGLIADYSL
CCCCCCCCCCCCCEECCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC
NAQTRHQEQGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDDDDSSNSTTSKH
CCCHHHHHCCCCCCCCCCCCCEECCCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCC
WDWSRYYAWRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVS
CCHHHEEEECCCCCHHEEEECCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
GVAHSSAKVTISQMGRVLYETQVPAGPFRIQDIGDSVSGTLHVRVEEQNGQVQEYDVTTA
CCCCCCCEEEHHHHCCEEEECCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEEC
SMPFLTRQGQVRYKVMMGRPEDWNHKTEGGFFSGGEASWGVADGWSLYGGALADKHYQSA
CCCEEECCCCEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCHHCCCCHHHHHHHHH
AMGVGRDLAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFAG
HHHCCHHHHHHCCEEEEEEECEEECCCCCCCCCCCCCCCEEEEEHHHCHHHHCCEEEEEE
YRFSEKNFMTMSEYLDANQSDMARTGNDKEMYTITYNQNFAAAGVSIYLNYSHRTYWDRP
EEECCCCCEEHHHHHCCCCHHHHHCCCCCEEEEEEECCCEEECCEEEEEEECCCEECCCC
EQTNYNLMFSHYFNMGSIRNMSISVTGYRYEYDDNADKGMYLSMSIPWSDSSTVTYNGSY
CCCCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCC
GSGSDSSQVGYFKRVDDATHYQVNVGTSEQHGSADGYLSHDGSLAKVDLSANYHEGEYRS
CCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCC
AGIALQGGATLTAHGGALHRTQNMGGTRLLIDADGIANVPVESNGAPVYTNMFGKAVVAD
CCEEEECCEEEEECCCEEEEECCCCCEEEEEECCCCEECCCCCCCCEEEEHHCCCHHHHH
INNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFKVISGQKAMAVLRLRDGSY
HHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCC
PPFGAEVKNDEQQQVGIVDDEGNVYLAGVNADEHMMVFWEGSAQCEIVLPKPLPADLFSG
CCCCCCCCCCCHHCCCEEECCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCHHHHCC
LLLPCEQKGTAAPDSSAPEIKPVIQGQTRQVTPTEAPRSISATQ
CEEECCCCCCCCCCCCCCCCCCEECCCCEECCCCCCCCCCCCCC
>Mature Secondary Structure
MCMPNHSNFRLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGY
CCCCCCCCEEEEEEEEEEEEEEECCCEECCCCCCEEECCEEEEECCCCEEECCCCCCCCC
VDAGKYNLRVFINKHPLSDEYDINWYVSENDPTKNYACLTPELVAALGLKEGIAKSLQWT
EECCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCC
HNDECLKPGQLDGMEVENDLSQSALLLTVPQAYLEYTSSDWDPPSRWDDGIPGLIADYSL
CCCCCCCCCCCCCEECCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC
NAQTRHQEQGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDDDDSSNSTTSKH
CCCHHHHHCCCCCCCCCCCCCEECCCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCC
WDWSRYYAWRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVS
CCHHHEEEECCCCCHHEEEECCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
GVAHSSAKVTISQMGRVLYETQVPAGPFRIQDIGDSVSGTLHVRVEEQNGQVQEYDVTTA
CCCCCCCEEEHHHHCCEEEECCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEEC
SMPFLTRQGQVRYKVMMGRPEDWNHKTEGGFFSGGEASWGVADGWSLYGGALADKHYQSA
CCCEEECCCCEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCHHCCCCHHHHHHHHH
AMGVGRDLAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFAG
HHHCCHHHHHHCCEEEEEEECEEECCCCCCCCCCCCCCCEEEEEHHHCHHHHCCEEEEEE
YRFSEKNFMTMSEYLDANQSDMARTGNDKEMYTITYNQNFAAAGVSIYLNYSHRTYWDRP
EEECCCCCEEHHHHHCCCCHHHHHCCCCCEEEEEEECCCEEECCEEEEEEECCCEECCCC
EQTNYNLMFSHYFNMGSIRNMSISVTGYRYEYDDNADKGMYLSMSIPWSDSSTVTYNGSY
CCCCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCC
GSGSDSSQVGYFKRVDDATHYQVNVGTSEQHGSADGYLSHDGSLAKVDLSANYHEGEYRS
CCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCC
AGIALQGGATLTAHGGALHRTQNMGGTRLLIDADGIANVPVESNGAPVYTNMFGKAVVAD
CCEEEECCEEEEECCCEEEEECCCCCEEEEEECCCCEECCCCCCCCEEEEHHCCCHHHHH
INNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFKVISGQKAMAVLRLRDGSY
HHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCC
PPFGAEVKNDEQQQVGIVDDEGNVYLAGVNADEHMMVFWEGSAQCEIVLPKPLPADLFSG
CCCCCCCCCCCHHCCCEEECCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCHHHHCC
LLLPCEQKGTAAPDSSAPEIKPVIQGQTRQVTPTEAPRSISATQ
CEEECCCCCCCCCCCCCCCCCCEECCCCEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]