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The map label for this gene is yfcS [H]

Identifier: 218690496

GI number: 218690496

Start: 2738190

End: 2738942

Strand: Reverse

Name: yfcS [H]

Synonym: ECED1_2800

Alternate gene names: 218690496

Gene position: 2738942-2738190 (Counterclockwise)

Preceding gene: 218690497

Following gene: 218690495

Centisome position: 52.58

GC content: 55.51

Gene sequence:

>753_bases
ATGTCTTATAAATTATCCTGTCCAATGCTCGTCAGCACAGCGCTGATGGCACAGCTTACCACCGCCAGCCTGACGGCGCA
TGCATCGGTCACCCCGGATCGCACCCGTCTGGTGTTTAACGAAAGCGATAAATCGATCAGCGTGACGTTGCGTAACAACA
ACGAAAAGCTGCCTTACCTGGCGCAAAGCTGGCTGGAAGACGAGAAGGGCAACAAAATCACTTCGCCGCTGGCGGTGCTG
CCGCCGGTGCAGCGTATTGACGCTATGATGAACGGCCAGGTGAAGATTCAGGCGCTGCCGGACATTCACACGCTGCCGTC
CGACCGAGAAAGCCTGTTCTACTACAACGTGCGTGAGATCCCGCCAAAGTCCGGGAAAGCCAACACCCTGCAAATTGCGC
TGCAAACGCGCATCAAGCTGTTCTGGCGACCAAAGGCGCTGGAAAAGATTGACATGAGAAAACCGTGGCAGTTTAAGGTC
ACACTCACGCGCAGCGGCCAGGACTATACCGTCAATAACCCGACGCCGTACCACGTCATCATCAGCGATGCCAGCACACA
GAAGAAAGGGCTGACTGCCGCCGGGTTTAAACCGCTGGTGATGCCACCGAAAACGTCACAACCGTTAAAGGCAAAAATGG
CGAGCGCCCCGGTGCTGACCTATATCAACGACTACGGCGCGCGCATGCCGCTGATCTTCCGTTGTGAAGGGAACACCTGC
AAGGTGGATGAAGATCAAAGCAGCAAAGGTTGA

Upstream 100 bases:

>100_bases
GAAATTAAGCCTGTTATTCAGGGCCAGACGCGGCAAGTCACACCAACGGAAGCGCCGAGGTCAATTTCAGCAACTCAATA
ATCTGATTAAGGAACGATCA

Downstream 100 bases:

>100_bases
TAACGGGAGAAGCAACATGAAAGCGTTCTTTCTGACCGGATCTGCCGCGCTATTGCTGGCCTGTGGCGTGACCGTTTTCC
CGGCAATGGCGGGCGGCAAA

Product: putative periplasmic pilus exported chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSYKLSCPMLVSTALMAQLTTASLTAHASVTPDRTRLVFNESDKSISVTLRNNNEKLPYLAQSWLEDEKGNKITSPLAVL
PPVQRIDAMMNGQVKIQALPDIHTLPSDRESLFYYNVREIPPKSGKANTLQIALQTRIKLFWRPKALEKIDMRKPWQFKV
TLTRSGQDYTVNNPTPYHVIISDASTQKKGLTAAGFKPLVMPPKTSQPLKAKMASAPVLTYINDYGARMPLIFRCEGNTC
KVDEDQSSKG

Sequences:

>Translated_250_residues
MSYKLSCPMLVSTALMAQLTTASLTAHASVTPDRTRLVFNESDKSISVTLRNNNEKLPYLAQSWLEDEKGNKITSPLAVL
PPVQRIDAMMNGQVKIQALPDIHTLPSDRESLFYYNVREIPPKSGKANTLQIALQTRIKLFWRPKALEKIDMRKPWQFKV
TLTRSGQDYTVNNPTPYHVIISDASTQKKGLTAAGFKPLVMPPKTSQPLKAKMASAPVLTYINDYGARMPLIFRCEGNTC
KVDEDQSSKG
>Mature_249_residues
SYKLSCPMLVSTALMAQLTTASLTAHASVTPDRTRLVFNESDKSISVTLRNNNEKLPYLAQSWLEDEKGNKITSPLAVLP
PVQRIDAMMNGQVKIQALPDIHTLPSDRESLFYYNVREIPPKSGKANTLQIALQTRIKLFWRPKALEKIDMRKPWQFKVT
LTRSGQDYTVNNPTPYHVIISDASTQKKGLTAAGFKPLVMPPKTSQPLKAKMASAPVLTYINDYGARMPLIFRCEGNTCK
VDEDQSSKG

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=221, Percent_Identity=78.7330316742081, Blast_Score=377, Evalue=1e-106,
Organism=Escherichia coli, GI1786936, Length=229, Percent_Identity=41.0480349344978, Blast_Score=173, Evalue=8e-45,
Organism=Escherichia coli, GI87082203, Length=227, Percent_Identity=37.0044052863436, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI1787171, Length=220, Percent_Identity=33.6363636363636, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1786333, Length=232, Percent_Identity=34.051724137931, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789532, Length=205, Percent_Identity=32.6829268292683, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788428, Length=213, Percent_Identity=34.2723004694836, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790771, Length=234, Percent_Identity=31.1965811965812, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786743, Length=243, Percent_Identity=29.6296296296296, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081806, Length=233, Percent_Identity=28.755364806867, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27941; Mature: 27809

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKLSCPMLVSTALMAQLTTASLTAHASVTPDRTRLVFNESDKSISVTLRNNNEKLPYL
CCEECCCHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCHH
AQSWLEDEKGNKITSPLAVLPPVQRIDAMMNGQVKIQALPDIHTLPSDRESLFYYNVREI
HHHHHCCCCCCEECCCEEECCCHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEEEEC
PPKSGKANTLQIALQTRIKLFWRPKALEKIDMRKPWQFKVTLTRSGQDYTVNNPTPYHVI
CCCCCCCCEEEEEEEEEEEEEECCHHHHHHCCCCCEEEEEEEEECCCCEECCCCCCEEEE
ISDASTQKKGLTAAGFKPLVMPPKTSQPLKAKMASAPVLTYINDYGARMPLIFRCEGNTC
EECCCCCCCCCEECCCCCEEECCCCCCCHHHHHCCCCEEEEECCCCCCCCEEEEECCCEE
KVDEDQSSKG
ECCCCCCCCC
>Mature Secondary Structure 
SYKLSCPMLVSTALMAQLTTASLTAHASVTPDRTRLVFNESDKSISVTLRNNNEKLPYL
CEECCCHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCHH
AQSWLEDEKGNKITSPLAVLPPVQRIDAMMNGQVKIQALPDIHTLPSDRESLFYYNVREI
HHHHHCCCCCCEECCCEEECCCHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEEEEC
PPKSGKANTLQIALQTRIKLFWRPKALEKIDMRKPWQFKVTLTRSGQDYTVNNPTPYHVI
CCCCCCCCEEEEEEEEEEEEEECCHHHHHHCCCCCEEEEEEEEECCCCEECCCCCCEEEE
ISDASTQKKGLTAAGFKPLVMPPKTSQPLKAKMASAPVLTYINDYGARMPLIFRCEGNTC
EECCCCCCCCCEECCCCCEEECCCCCCCHHHHHCCCCEEEEECCCCCCCCEEEEECCCEE
KVDEDQSSKG
ECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]