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The map label for this gene is virB10 [H]

Identifier: 218689996

GI number: 218689996

Start: 2206586

End: 2207842

Strand: Direct

Name: virB10 [H]

Synonym: ECED1_2269

Alternate gene names: 218689996

Gene position: 2206586-2207842 (Clockwise)

Preceding gene: 218689995

Following gene: 218689997

Centisome position: 42.36

GC content: 56.32

Gene sequence:

>1257_bases
GTGCATATGAACGACGAAAACAAAATGCCTGTGCCGGATGAAGCGCAGGCATTCCCGGCACACGCTGAGGATGATATTGC
CACGCTTGAGCGGGAAGCCCGCGCTAAAAGGGAGGCCGAGCTTCTCAATGCGCAGGACGACGAAGAGAAAGACCCGGTAC
AACCCGCCGTTAACAAGCTGAAAAAGCGCAAACGGGGCAAAGCAACCGCCTTTCTTGCCATTGTCGCGGTCACGCTTATC
TTCCTGGCATGGGGTGGTAACTGGGTTTATCGCAATATCCTGTGGCAGCCTACGGAAGAAAAGAAACAGGACACAGCCCC
GCAGACGAACAAAACCGATTACCGGCAGCGTAACGATCTCGGTATGTCCACCGATACAGCCGAAGAAGAGCCAGAGCAAC
AGGATAACGGCCAGAGCAGCACGGGGGGAACAGGGCAGGTGGCTCCGGCCGCCCCGCCAGAACTCAACAAAGCCAGCTTC
CTTATTCGCCGTGATGGTTCGGCCACCACACAGAACCCGGTAAAAACCCGGCAGCAGGAAATGACGCTGACATCGGCAAC
GACCACCGGACAACAGGACAGCAGCGCGGCCACAAATACCGCCGCACCGCCGCCGGGACAAAGCCCCGCACCACTGCGCC
GCATACCCTATAACCCTGACCTGTACATCCCGGAAAATACCTCGATCCCCTGCTCACTGGATCGCCGCTTTGTATCTGAC
CGGGCGGGGAAACTTCGCTGCACGGTCACTACTGACATCTGGAGCGCCAGCGGCAACACGAAGCTGATAGAGAAAGGCAC
CACCGCATCATTACTTTACCGCGCCATAGCGGAAGAAGGTATGAAGCACGGGCAAGGGCGGGCATTCATCATTGCGACGA
AGCTACGCACCCGCCAGCCGCCTTATCTCGATATCCCGTTGGTTGATACCAGCGCGGCTGGCGAGCTGGGCGAGGCTGGC
GTTGATGGCTGGATAGATTCGCACTTCTGGGAACGGTTCGGCGGCGCGTTAATGGTCGGCATGATCCCCGATATTGGCGC
ATGGGCATCCAACAGCGCGGGTAAAAAAGACCGCAATACGGACTATACGGAAAACAGCCGCCAGGCTATGGCAGATATGG
CACGTACCACGCTAGAGAACAGCATCAATATTCCCCCAACGCTCTATAAGAATCAGGGCGAGATCATCAACCTAATCACA
GGCGAGGATATTGATTTTTCCAACATCTATACACTGAGGTTGAAAAATGACCGCTAA

Upstream 100 bases:

>100_bases
AGGTACACGCCGCCGATGGTTCCACCGTATCCCGGCAGGTGGAAAGAGTGGAAAAACCGGAATCCAATTAACCTATAAAA
ATATTTTTATAAAAGGAAAC

Downstream 100 bases:

>100_bases
GAATATTTCCCTCGACCGCTATAAACAGCGTTTCTTTGGCGACTTTCTAGAGCTTCCCGGCCTGACGGAGATCGCCGTCA
ATCGTCCAGGTGAGCTGTAT

Product: putative type IV secretory pathway VirB10 component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MHMNDENKMPVPDEAQAFPAHAEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKLKKRKRGKATAFLAIVAVTLI
FLAWGGNWVYRNILWQPTEEKKQDTAPQTNKTDYRQRNDLGMSTDTAEEEPEQQDNGQSSTGGTGQVAPAAPPELNKASF
LIRRDGSATTQNPVKTRQQEMTLTSATTTGQQDSSAATNTAAPPPGQSPAPLRRIPYNPDLYIPENTSIPCSLDRRFVSD
RAGKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAIAEEGMKHGQGRAFIIATKLRTRQPPYLDIPLVDTSAAGELGEAG
VDGWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNTDYTENSRQAMADMARTTLENSINIPPTLYKNQGEIINLIT
GEDIDFSNIYTLRLKNDR

Sequences:

>Translated_418_residues
MHMNDENKMPVPDEAQAFPAHAEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKLKKRKRGKATAFLAIVAVTLI
FLAWGGNWVYRNILWQPTEEKKQDTAPQTNKTDYRQRNDLGMSTDTAEEEPEQQDNGQSSTGGTGQVAPAAPPELNKASF
LIRRDGSATTQNPVKTRQQEMTLTSATTTGQQDSSAATNTAAPPPGQSPAPLRRIPYNPDLYIPENTSIPCSLDRRFVSD
RAGKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAIAEEGMKHGQGRAFIIATKLRTRQPPYLDIPLVDTSAAGELGEAG
VDGWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNTDYTENSRQAMADMARTTLENSINIPPTLYKNQGEIINLIT
GEDIDFSNIYTLRLKNDR
>Mature_418_residues
MHMNDENKMPVPDEAQAFPAHAEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKLKKRKRGKATAFLAIVAVTLI
FLAWGGNWVYRNILWQPTEEKKQDTAPQTNKTDYRQRNDLGMSTDTAEEEPEQQDNGQSSTGGTGQVAPAAPPELNKASF
LIRRDGSATTQNPVKTRQQEMTLTSATTTGQQDSSAATNTAAPPPGQSPAPLRRIPYNPDLYIPENTSIPCSLDRRFVSD
RAGKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAIAEEGMKHGQGRAFIIATKLRTRQPPYLDIPLVDTSAAGELGEAG
VDGWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNTDYTENSRQAMADMARTTLENSINIPPTLYKNQGEIINLIT
GEDIDFSNIYTLRLKNDR

Specific function: The virB system could be required for the establishment of the replication niche in the host [H]

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 46063; Mature: 46063

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMNDENKMPVPDEAQAFPAHAEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
KKRKRGKATAFLAIVAVTLIFLAWGGNWVYRNILWQPTEEKKQDTAPQTNKTDYRQRNDL
HHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCC
GMSTDTAEEEPEQQDNGQSSTGGTGQVAPAAPPELNKASFLIRRDGSATTQNPVKTRQQE
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHH
MTLTSATTTGQQDSSAATNTAAPPPGQSPAPLRRIPYNPDLYIPENTSIPCSLDRRFVSD
HEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHC
RAGKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAIAEEGMKHGQGRAFIIATKLRTRQP
CCCEEEEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
PYLDIPLVDTSAAGELGEAGVDGWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNT
CEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCC
DYTENSRQAMADMARTTLENSINIPPTLYKNQGEIINLITGEDIDFSNIYTLRLKNDR
CCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MHMNDENKMPVPDEAQAFPAHAEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
KKRKRGKATAFLAIVAVTLIFLAWGGNWVYRNILWQPTEEKKQDTAPQTNKTDYRQRNDL
HHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHCC
GMSTDTAEEEPEQQDNGQSSTGGTGQVAPAAPPELNKASFLIRRDGSATTQNPVKTRQQE
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHH
MTLTSATTTGQQDSSAATNTAAPPPGQSPAPLRRIPYNPDLYIPENTSIPCSLDRRFVSD
HEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHC
RAGKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAIAEEGMKHGQGRAFIIATKLRTRQP
CCCEEEEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
PYLDIPLVDTSAAGELGEAGVDGWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNT
CEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCC
DYTENSRQAMADMARTTLENSINIPPTLYKNQGEIINLITGEDIDFSNIYTLRLKNDR
CCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11830669; 12271122 [H]