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The map label for this gene is ydcI [H]

Identifier: 218689353

GI number: 218689353

Start: 1560597

End: 1561520

Strand: Reverse

Name: ydcI [H]

Synonym: ECED1_1578

Alternate gene names: 218689353

Gene position: 1561520-1560597 (Counterclockwise)

Preceding gene: 218689356

Following gene: 218689350

Centisome position: 29.97

GC content: 50.32

Gene sequence:

>924_bases
ATGGAAAAAAATAGTCTGTTTAGTCAGCGCATCCGTTTGCGCCACCTTCATACATTCGTAGCTGTCGCACAACAAGGAAC
TTTGGGGCGCGCGGCTGAAACCCTTAATTTGAGTCAACCTGCGCTCTCTAAGACATTGAATGAACTGGAGCAGCTGACGG
GCGCTCGCTTGTTTGAGCGTGGTCGTCAGGGGGCGCAACTTACCTTACCCGGCGAACAATTTTTAACGCATGCAGTCAGA
GTTCTTGACGCCATCAACACTGCCGGACAGTCGCTTCATCGTAAAGAAGGTCTTAATAATGATGTCGTCAGGGTTGGTGC
GCTACCTACTGCGGCACTAGGGATATTACCTTCGGTTATAGGTCAGTTTCATCAGCAACAAAAAGAGACGACCTTGCAAG
TTGCGACAATGAGTAACCCTATGATTCTGGCGGGTTTAAAAACCGGGGAAATCGATATCGGCATTGGTCGGATGTCAGAT
CCTGAACTGATGAACGGGCTTAATTATGAACTGCTGTTTCTTGAATCGCTGAAGCTGGTTGTCCGCCCCAATCACCCGCT
ACTTCAGGAGAACGTAACGCTAAGCCGGGTGCTGGAATGGCCGGTCGTTGTATCACCAGAAGGCACTGCGCCACGCCAGC
ATTCAGATGCATTAGTGCAGAGCCAGGGATGTAAAATTCCTTCGGGTTGTATCGAAACGCTGTCTGCTTCGCTATCTCGT
CAACTTACGGTTGAATACGATTACGTGTGGTTTGTCCCTTCTGGCGCTGTAAAAGACGACCTGCGTCATGCCACGCTGGT
AGCCCTGCCTGTTCCGGGACATGGTGCAGGCGAACCGATTGGAATACTGACCCGCGTAGATGCGACGTTCTCTTCTGGTT
GCCAGTTGATGATTAACGCTATTCGAAAATCAATGCCGTTCTGA

Upstream 100 bases:

>100_bases
TAACATAGTTGCTTTAATTGTTAATAATATTTTGCAATCAAGTTATCATAATAAAACAACTTCACTTGTCAGCGACACCG
CTTCGTTTTTAACATCGCTT

Downstream 100 bases:

>100_bases
AAGGTGAAGGGATCTGTCGATCCCTCCTTTAACATTTTCACACCGTAGCAAAACTAACTGGTTCACCAGCTCCTCGTGGT
TCTGCCGACACAGAATGTTT

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVR
VLDAINTAGQSLHRKEGLNNDVVRVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
PELMNGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF

Sequences:

>Translated_307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVR
VLDAINTAGQSLHRKEGLNNDVVRVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
PELMNGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF
>Mature_307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVR
VLDAINTAGQSLHRKEGLNNDVVRVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
PELMNGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=307, Percent_Identity=99.3485342019544, Blast_Score=622, Evalue=1e-179,
Organism=Escherichia coli, GI1787601, Length=264, Percent_Identity=29.1666666666667, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=33.0396475770925, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788887, Length=181, Percent_Identity=33.7016574585635, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=32.8205128205128, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790262, Length=219, Percent_Identity=29.2237442922374, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=203, Percent_Identity=23.1527093596059, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=179, Percent_Identity=29.0502793296089, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789204, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788296, Length=211, Percent_Identity=30.3317535545024, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=150, Percent_Identity=30.6666666666667, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790399, Length=301, Percent_Identity=22.5913621262458, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33387; Mature: 33387

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFER
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDVVRVGALPTAALGILPSVI
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
GQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMNGLNYELLFLESLKLV
HHHHHHHHHHEEEEEECCCCEEEEECCCCCEEEECCCCCCHHHHCCCCEEEEEEECCEEE
VRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
ECCCCCCHHCCCHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINA
EEEEEEEEEEEECCCCHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCHHCCHHHHHHH
IRKSMPF
HHHHCCC
>Mature Secondary Structure
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFER
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDVVRVGALPTAALGILPSVI
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
GQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMNGLNYELLFLESLKLV
HHHHHHHHHHEEEEEECCCCEEEEECCCCCEEEECCCCCCHHHHCCCCEEEEEEECCEEE
VRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
ECCCCCCHHCCCHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINA
EEEEEEEEEEEECCCCHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCHHCCHHHHHHH
IRKSMPF
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]