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The map label for this gene is yjtD [H]

Identifier: 218551706

GI number: 218551706

Start: 4587869

End: 4588555

Strand: Direct

Name: yjtD [H]

Synonym: EFER_4501

Alternate gene names: 218551706

Gene position: 4587869-4588555 (Clockwise)

Preceding gene: 218551704

Following gene: NA

Centisome position: 99.98

GC content: 47.02

Gene sequence:

>687_bases
ATGCGATTAACAATTATTCTGGTTGCGCCTGCCAGAGCGGAAAATATTGGTGCGGCAGCACGGGCGATGAAAACGATGGG
ATTTCATGAGATGCGTATCGTCGATAGCCAGGCTCATCTCGAACCCGCCACGCGTTGGGTTGCTCACGGCTCGGGAGATA
TTATTGATAATATTGCGGTTTTTTCGAGTCTTGCTGAAGCGTTACAGGACGTGGATTTTACTATTGCAACCACGGCACGA
AGCCGGGCGAAGTTTCATTACTACGCGACGCCAACAGAACTGGTGCCTTTGTTGGAGGAAAAATCGTCATGGATGAATCA
TGTAGCACTGGTTTTTGGCCGGGAAGATTCAGGTCTGACGAATGAAGAGTTGGCTCTGGCAGATATTCTCACTGGTGTGC
CAATGGTGGCAGATTACCCTTCGTTAAATTTGGGTCAGGCAGTAATGGTCTACTGCTATCAATTAGCAAACTTAATGCAA
CAACCCATTAAAGCCCTCGACATGAGTGATGAACATCAGCTGACTGCATTACGCACGCGTGTGATGCGGCTTTTATCAAC
ATTAGACGTGGCTGATGACGTAAAACTGGTGGAATGGTTGCAACAGCGACTGGGGCTATTAGGACAACGAGATACAGCAA
TGTTGCATCGTTTACTGCACGATATTGAAAAAAACATCGCCAAATAA

Upstream 100 bases:

>100_bases
GCTTTTAACGTGTTTTTCGTTAAAATTTTGTAAATTCGCGCTGCGTAATAAGCTGACATTTACGCTTGTTTGCCAGGGCA
AAGAGTAAAAGAGCAACACT

Downstream 100 bases:

>100_bases
AAACGCATATTTTAGGATTTTTTTAGCTTTATACCCTGCCTGCAAGTAGTGATTGTTGCTTTTGTTGGTTGAATGTCGCA
GAACACCCAGCATGTTGTGA

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRLTIILVAPARAENIGAAARAMKTMGFHEMRIVDSQAHLEPATRWVAHGSGDIIDNIAVFSSLAEALQDVDFTIATTAR
SRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDSGLTNEELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQ
QPIKALDMSDEHQLTALRTRVMRLLSTLDVADDVKLVEWLQQRLGLLGQRDTAMLHRLLHDIEKNIAK

Sequences:

>Translated_228_residues
MRLTIILVAPARAENIGAAARAMKTMGFHEMRIVDSQAHLEPATRWVAHGSGDIIDNIAVFSSLAEALQDVDFTIATTAR
SRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDSGLTNEELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQ
QPIKALDMSDEHQLTALRTRVMRLLSTLDVADDVKLVEWLQQRLGLLGQRDTAMLHRLLHDIEKNIAK
>Mature_228_residues
MRLTIILVAPARAENIGAAARAMKTMGFHEMRIVDSQAHLEPATRWVAHGSGDIIDNIAVFSSLAEALQDVDFTIATTAR
SRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDSGLTNEELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQ
QPIKALDMSDEHQLTALRTRVMRLLSTLDVADDVKLVEWLQQRLGLLGQRDTAMLHRLLHDIEKNIAK

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790865, Length=228, Percent_Identity=85.0877192982456, Blast_Score=406, Evalue=1e-115,
Organism=Escherichia coli, GI1788881, Length=153, Percent_Identity=35.9477124183007, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004384
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 25407; Mature: 25407

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTIILVAPARAENIGAAARAMKTMGFHEMRIVDSQAHLEPATRWVAHGSGDIIDNIAV
CEEEEEEEECCCCHHHHHHHHHHHHHCHHHHEEECCHHHHHHHHHHHHCCCCCHHHHHHH
FSSLAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDSGLT
HHHHHHHHHHCCHHEEECHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
NEELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLTALRTR
CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VMRLLSTLDVADDVKLVEWLQQRLGLLGQRDTAMLHRLLHDIEKNIAK
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLTIILVAPARAENIGAAARAMKTMGFHEMRIVDSQAHLEPATRWVAHGSGDIIDNIAV
CEEEEEEEECCCCHHHHHHHHHHHHHCHHHHEEECCHHHHHHHHHHHHCCCCCHHHHHHH
FSSLAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDSGLT
HHHHHHHHHHCCHHEEECHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
NEELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLTALRTR
CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VMRLLSTLDVADDVKLVEWLQQRLGLLGQRDTAMLHRLLHDIEKNIAK
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 8022271 [H]