Click here to switch to the map view.

The map label for this gene is alsC [H]

Identifier: 218551501

GI number: 218551501

Start: 4387242

End: 4388222

Strand: Direct

Name: alsC [H]

Synonym: EFER_4284

Alternate gene names: 218551501

Gene position: 4387242-4388222 (Clockwise)

Preceding gene: 218551500

Following gene: 218551502

Centisome position: 95.61

GC content: 51.38

Gene sequence:

>981_bases
ATGGGCATTACCACAAGAGTAAAAGGCGAGGTCGCGGAGAAAAAACCGTTCAACTTCGCGCTGTTCTGGGATAAGTACGG
CACGTTTTTTATCCTCGCTATCATCGTCGCCATCTTCGGTTCTTTGTCGCCGGAGTATTTTTTAACGACGAACAACATTA
GTCAGATCTTTGTTCAAAGCTCCGTTACCGTATTGATTGGTATGGGCGAGTTCTTTGCCATTCTGGTAGCAGGTATTGAC
CTTTCTGTCGGCGCGATTCTGGCGCTCTCCGGTATGGTGACGGCCAAACTGATGCTGGCGGGGATTGATCCGATCATCGC
AGCACTGATTGGTGGTGTGCTGGTAGGTGGCGCTTTGGGGGCTATCAACGGTTGCCTGGTCAACTGGACAGGTCTCCATC
CGTTTATTATCACTCTTGGCACAAACGCCATTTTTCGTGGCATCACCCTGGTGATTTCTGATGCCAACTCGGTGTATGGC
TTCTCCTTTGATTTCGTTAACTTCTTCGCCGCAAGCCCACTTGGGATCCCTATTCCGGTGATCTTCTCTCTGCTGATTGC
GTTGGTCCTCTGGTTTCTCACTACCCGGATGCGGCTTGGGCGCAACATTTATGCCCTCGGCGGCAATAAAAACTCGGCGT
TCTATTCCGGGATCGATGTGAAGTTTCACACTTTGGTGGTGTTCATCATCTCTGGTGTTTGTGCTGGACTGGCGGGCGTG
GTTTCCACGGCGCGTCTGGGCGCGGCAGAACCTCTCGCCGGTATGGGATTCGAAACCTACGCCATTGCCAGTGCCATCAT
TGGCGGGACCAGTTTCTTCGGTGGCAAAGGGCGCATTTTCTCGGTGGTTATTGGCGGGTTAATTATCGGCACTATCAATA
ACGGTCTCAATATTCTGCAAGTACAAACCTACTACCAGCTGGTGGTGATGGGTGGATTAATTATCGCGGCTGTCGCCCTC
GACCGTCTTATCAGTAAGTAA

Upstream 100 bases:

>100_bases
AAATTCTCGCCGTCTGTGACCGCATCGCTGTGTTCTGCGAGGGGCGACTGACGCAAATCCTGACCAACTGCGATGACCTG
AGCGAAGAGGAGATTATGGC

Downstream 100 bases:

>100_bases
GGAATAGAACATGAAAATCGCTCCCTCATTAATGTGTATGGATCTGCTGAAATTTAAAGAACAGATCGAGTTTATAGACA
GTCACGCAGATTATTTTCAC

Product: D-allose transporter subunit

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MGITTRVKGEVAEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNISQIFVQSSVTVLIGMGEFFAILVAGID
LSVGAILALSGMVTAKLMLAGIDPIIAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYG
FSFDFVNFFAASPLGIPIPVIFSLLIALVLWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHTLVVFIISGVCAGLAGV
VSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVAL
DRLISK

Sequences:

>Translated_326_residues
MGITTRVKGEVAEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNISQIFVQSSVTVLIGMGEFFAILVAGID
LSVGAILALSGMVTAKLMLAGIDPIIAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYG
FSFDFVNFFAASPLGIPIPVIFSLLIALVLWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHTLVVFIISGVCAGLAGV
VSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVAL
DRLISK
>Mature_325_residues
GITTRVKGEVAEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNISQIFVQSSVTVLIGMGEFFAILVAGIDL
SVGAILALSGMVTAKLMLAGIDPIIAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGF
SFDFVNFFAASPLGIPIPVIFSLLIALVLWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHTLVVFIISGVCAGLAGVV
STARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD
RLISK

Specific function: Part of the binding-protein-dependent transport system AlsBAC for D-allose; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=326, Percent_Identity=95.0920245398773, Blast_Score=587, Evalue=1e-169,
Organism=Escherichia coli, GI1790191, Length=317, Percent_Identity=39.7476340694006, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI145693152, Length=326, Percent_Identity=29.7546012269939, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788896, Length=304, Percent_Identity=28.9473684210526, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=40.7407407407407, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788471, Length=325, Percent_Identity=33.2307692307692, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082395, Length=283, Percent_Identity=32.8621908127208, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787794, Length=307, Percent_Identity=28.0130293159609, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693214, Length=246, Percent_Identity=34.5528455284553, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787793, Length=278, Percent_Identity=28.0575539568345, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34212; Mature: 34081

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGITTRVKGEVAEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNISQIFVQS
CCCCCCCCCCHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHC
SVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGIDPIIAALIGGVLVGGALG
CEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
AINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASPLGIPIPV
HCCCEEEEECCCCEEEEEECCHHHHHCEEEEEECCCCEEEEEHHHHHHHHCCCCCCCHHH
IFSLLIALVLWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHTLVVFIISGVCAGLAGV
HHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
VSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQ
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHEEEECCCCEEEE
VQTYYQLVVMGGLIIAAVALDRLISK
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GITTRVKGEVAEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNISQIFVQS
CCCCCCCCCHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHC
SVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGIDPIIAALIGGVLVGGALG
CEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
AINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASPLGIPIPV
HCCCEEEEECCCCEEEEEECCHHHHHCEEEEEECCCCEEEEEHHHHHHHHCCCCCCCHHH
IFSLLIALVLWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHTLVVFIISGVCAGLAGV
HHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
VSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQ
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHEEEECCCCEEEE
VQTYYQLVVMGGLIIAAVALDRLISK
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503; 7610040; 9401019 [H]