Click here to switch to the map view.

The map label for this gene is yjfM [H]

Identifier: 218551455

GI number: 218551455

Start: 4345733

End: 4346386

Strand: Direct

Name: yjfM [H]

Synonym: EFER_4238

Alternate gene names: 218551455

Gene position: 4345733-4346386 (Clockwise)

Preceding gene: 218551454

Following gene: 218551456

Centisome position: 94.7

GC content: 47.71

Gene sequence:

>654_bases
ATGATCATGGCTAAAAAACGCAAATCTACAAAAGGCAATAATACACTCAAACATGCCACCGCCAGCCGTATCAATCGGCC
AGCAGGTGCCACGTCTGCCAAACGAACACGTTATACAGAAAAATATCTGACACTGGCGTTAATGGGTACAGCTGCATTTT
TTGTACTTAAAGGTTGTAACGACAGTGGTGACGTTGATAACAATAACGACGGCGACGGTACTTATTATTCCAGTGTGCAG
GATTGTATTTATGCAGGTAACGATTCTACCGTTTGTGCTGACGGATGGAACAACGCTAAAACCCTATTTTATGCCGATGT
GCCGAAGAATTTGTCGCAACATGGCTGCCTGATGCAGTATCAAAATTGCTATTTCGATAGTGGCAATCAGGCCTGGCTAC
CGGTTGTGTCCGGGTTTCTGCTTAGCCGGACAATTCGTAAAGATCGCGATGAACAGTACGTTTATAACAGCAGTGGATCG
TCATACTCATCCCGCCCGGTCTGGCTTTCTACCTATGGGAAATACACCTGGCGCTCAGGGGCAGGAAATAAAAGTACAGC
CAGCACCAGTAGTTTTTCAACGAAAAAGGCGTCGACTGTCTCCCGTGGCGGTTATGGGCGTTCGTCCAGTGCGCGTGGGC
ATTGGGGAGGCTGA

Upstream 100 bases:

>100_bases
TGAAAAAATCATTAATCATAATACGGCAGCGGGAATGTTTATGGGCACCGCTGCGTTAGCTGGCGGTATTTTTAATGCTG
CCTGCATGACATGGTAATGG

Downstream 100 bases:

>100_bases
TCATGTTAAGACATGATATTTCTGTACGTCGCGATCTGGATCGAATTGCCGCCGATCATGGCTTCGACTTTCATATTATC
GACGATGAAATCTATTGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIMAKKRKSTKGNNTLKHATASRINRPAGATSAKRTRYTEKYLTLALMGTAAFFVLKGCNDSGDVDNNNDGDGTYYSSVQ
DCIYAGNDSTVCADGWNNAKTLFYADVPKNLSQHGCLMQYQNCYFDSGNQAWLPVVSGFLLSRTIRKDRDEQYVYNSSGS
SYSSRPVWLSTYGKYTWRSGAGNKSTASTSSFSTKKASTVSRGGYGRSSSARGHWGG

Sequences:

>Translated_217_residues
MIMAKKRKSTKGNNTLKHATASRINRPAGATSAKRTRYTEKYLTLALMGTAAFFVLKGCNDSGDVDNNNDGDGTYYSSVQ
DCIYAGNDSTVCADGWNNAKTLFYADVPKNLSQHGCLMQYQNCYFDSGNQAWLPVVSGFLLSRTIRKDRDEQYVYNSSGS
SYSSRPVWLSTYGKYTWRSGAGNKSTASTSSFSTKKASTVSRGGYGRSSSARGHWGG
>Mature_217_residues
MIMAKKRKSTKGNNTLKHATASRINRPAGATSAKRTRYTEKYLTLALMGTAAFFVLKGCNDSGDVDNNNDGDGTYYSSVQ
DCIYAGNDSTVCADGWNNAKTLFYADVPKNLSQHGCLMQYQNCYFDSGNQAWLPVVSGFLLSRTIRKDRDEQYVYNSSGS
SYSSRPVWLSTYGKYTWRSGAGNKSTASTSSFSTKKASTVSRGGYGRSSSARGHWGG

Specific function: Unknown

COG id: COG5463

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790628, Length=215, Percent_Identity=66.9767441860465, Blast_Score=299, Evalue=9e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009576 [H]

Pfam domain/function: PF06693 DUF1190 [H]

EC number: NA

Molecular weight: Translated: 23711; Mature: 23711

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMAKKRKSTKGNNTLKHATASRINRPAGATSAKRTRYTEKYLTLALMGTAAFFVLKGCN
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCC
DSGDVDNNNDGDGTYYSSVQDCIYAGNDSTVCADGWNNAKTLFYADVPKNLSQHGCLMQY
CCCCCCCCCCCCCHHHHHHHHHEEECCCCEEEECCCCCCCEEEEECCCCCHHHCCCEEEC
QNCYFDSGNQAWLPVVSGFLLSRTIRKDRDEQYVYNSSGSSYSSRPVWLSTYGKYTWRSG
CCCEECCCCEEHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEECCCEEEECC
AGNKSTASTSSFSTKKASTVSRGGYGRSSSARGHWGG
CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIMAKKRKSTKGNNTLKHATASRINRPAGATSAKRTRYTEKYLTLALMGTAAFFVLKGCN
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCC
DSGDVDNNNDGDGTYYSSVQDCIYAGNDSTVCADGWNNAKTLFYADVPKNLSQHGCLMQY
CCCCCCCCCCCCCHHHHHHHHHEEECCCCEEEECCCCCCCEEEEECCCCCHHHCCCEEEC
QNCYFDSGNQAWLPVVSGFLLSRTIRKDRDEQYVYNSSGSSYSSRPVWLSTYGKYTWRSG
CCCEECCCCEEHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEECCCEEEECC
AGNKSTASTSSFSTKKASTVSRGGYGRSSSARGHWGG
CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]