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The map label for this gene is ynfH [H]

Identifier: 218551402

GI number: 218551402

Start: 4292597

End: 4293373

Strand: Direct

Name: ynfH [H]

Synonym: EFER_4183

Alternate gene names: 218551402

Gene position: 4292597-4293373 (Clockwise)

Preceding gene: 218551401

Following gene: 218551403

Centisome position: 93.55

GC content: 52.9

Gene sequence:

>777_bases
ATGCATGAGTTACCACTGGTCTTTTTCACCGTATTTACCCAGAGCGCAGTGGGGGCGTTTATTCTGCTGCTGATTGGCGG
TGCCATGGGGTTAATTGAGCCACGTCGTATGGCGATTGGTCTCTTTTCGGTGATGTGCTTGTTTGGTGTGGGTGTTGTGC
TTGGCACCATTCATGTCGGGCAGCCGCTGCGAGCGCTGAATATGCTATTCCGTGTCGGCAGTTCTCCTATGAGTAACGAA
ATCGTGCTTTCGGCATGTTTTGCCGCAGCCGGAGGACTGGGATCTCTCGGTTTGCTGTTAAATCGCGGTGGTGCAATGCT
TTGTAAAGTACTGGTATGGCTGGCCGCTGCGATTGGAGTCGTGTTTATCTTTGCCATCCCGCGTATTTACCAGTTGGCAA
CGGTAGCGACCTGGAGTACCTCTTACACCACCATGATGATGGTGCTAACTGCACTTATCGGTGGCGGCATGTTGGCGGCG
TTGTTTGGCGTTCGTCGTCTGGGGCTGCTGGTAAGTGTACTGGCGATTCTGGCGAGTTTCTGTTTGCGTCCGGGTTATAT
TTCCACGCTAATGAGTGCTGATGGCGTTATTACCGCTGCGCAGTCCACCTGGTTTACCGCTCAGGCCATTCTGTTGGCGC
TGGGTGTTATTGGGGCACTGCTCTATGCACGCATGAAAAGTGGGCAAGCTGTGCTGGTGATGACTGCACTGGTGGTTATT
GCTGCTGAACTGGTTGGTCGGATCGGTTTCTACAACCTCTGGACCATCCCTATGTAA

Upstream 100 bases:

>100_bases
GCTTCGTTTACGCATCCTAACCTGATAATTAAACCGCATCCGCTGGCGCGACCTACGGGCGACAAAGAAGGGGCGATCAT
GAACATTCGGGAGGTGCGCC

Downstream 100 bases:

>100_bases
CCTGTGAGTGGCCGGTGTCTGCCCGGCCACCTCTGCTTTCAGGAGTGTTTAATCATGCCTTCCCCAGCCGTACTGGTGCG
TATTCTTGGTGCCCTGTTTT

Product: anaerobic reductase subunit C

Products: NA

Alternate protein names: DMSO reductase anchor subunit ynfH [H]

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MHELPLVFFTVFTQSAVGAFILLLIGGAMGLIEPRRMAIGLFSVMCLFGVGVVLGTIHVGQPLRALNMLFRVGSSPMSNE
IVLSACFAAAGGLGSLGLLLNRGGAMLCKVLVWLAAAIGVVFIFAIPRIYQLATVATWSTSYTTMMMVLTALIGGGMLAA
LFGVRRLGLLVSVLAILASFCLRPGYISTLMSADGVITAAQSTWFTAQAILLALGVIGALLYARMKSGQAVLVMTALVVI
AAELVGRIGFYNLWTIPM

Sequences:

>Translated_258_residues
MHELPLVFFTVFTQSAVGAFILLLIGGAMGLIEPRRMAIGLFSVMCLFGVGVVLGTIHVGQPLRALNMLFRVGSSPMSNE
IVLSACFAAAGGLGSLGLLLNRGGAMLCKVLVWLAAAIGVVFIFAIPRIYQLATVATWSTSYTTMMMVLTALIGGGMLAA
LFGVRRLGLLVSVLAILASFCLRPGYISTLMSADGVITAAQSTWFTAQAILLALGVIGALLYARMKSGQAVLVMTALVVI
AAELVGRIGFYNLWTIPM
>Mature_258_residues
MHELPLVFFTVFTQSAVGAFILLLIGGAMGLIEPRRMAIGLFSVMCLFGVGVVLGTIHVGQPLRALNMLFRVGSSPMSNE
IVLSACFAAAGGLGSLGLLLNRGGAMLCKVLVWLAAAIGVVFIFAIPRIYQLATVATWSTSYTTMMMVLTALIGGGMLAA
LFGVRRLGLLVSVLAILASFCLRPGYISTLMSADGVITAAQSTWFTAQAILLALGVIGALLYARMKSGQAVLVMTALVVI
AAELVGRIGFYNLWTIPM

Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds. The C subunit anchors the other two subunits to the membrane and stabilize the catalytic subunits [H]

COG id: COG3302

COG function: function code R; DMSO reductase anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli dmsC [H]

Homologues:

Organism=Escherichia coli, GI1787873, Length=156, Percent_Identity=40.3846153846154, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787123, Length=153, Percent_Identity=36.6013071895425, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007059 [H]

Pfam domain/function: PF04976 DmsC [H]

EC number: NA

Molecular weight: Translated: 27108; Mature: 27108

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHELPLVFFTVFTQSAVGAFILLLIGGAMGLIEPRRMAIGLFSVMCLFGVGVVLGTIHVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
QPLRALNMLFRVGSSPMSNEIVLSACFAAAGGLGSLGLLLNRGGAMLCKVLVWLAAAIGV
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
VFIFAIPRIYQLATVATWSTSYTTMMMVLTALIGGGMLAALFGVRRLGLLVSVLAILASF
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
CLRPGYISTLMSADGVITAAQSTWFTAQAILLALGVIGALLYARMKSGQAVLVMTALVVI
HCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AAELVGRIGFYNLWTIPM
HHHHHHHCCCHHEEECCC
>Mature Secondary Structure
MHELPLVFFTVFTQSAVGAFILLLIGGAMGLIEPRRMAIGLFSVMCLFGVGVVLGTIHVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
QPLRALNMLFRVGSSPMSNEIVLSACFAAAGGLGSLGLLLNRGGAMLCKVLVWLAAAIGV
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
VFIFAIPRIYQLATVATWSTSYTTMMMVLTALIGGGMLAALFGVRRLGLLVSVLAILASF
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
CLRPGYISTLMSADGVITAAQSTWFTAQAILLALGVIGALLYARMKSGQAVLVMTALVVI
HCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AAELVGRIGFYNLWTIPM
HHHHHHHCCCHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]