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The map label for this gene is yidZ [H]

Identifier: 218551242

GI number: 218551242

Start: 4112585

End: 4113553

Strand: Direct

Name: yidZ [H]

Synonym: EFER_4007

Alternate gene names: 218551242

Gene position: 4112585-4113553 (Clockwise)

Preceding gene: 218551241

Following gene: 218551243

Centisome position: 89.62

GC content: 50.98

Gene sequence:

>969_bases
TTGCCGCTCATGAAGAAATCCATCACCACGCTTGATCTCAATTTGCTGCTCTGTCTGCAACTGCTGATGCAGGAACGCAG
CGTGACTAAAGCGGCGAAGCGGATGAACGTGACCCCTTCGGCGGTGAGTAAGTCGCTGGCAAAGTTAAGAGCGTGGTTTG
ACGACCCGCTCTTTGTGAACTCACCGCTGGGCCTGTCACCCACACCGCTAATGGTCAGCATGGAGCAAAATCTGGCGGAG
TGGATGCAAATGAGCAATTTGCTGCTGGATAAACCACACCACGAAACGCCGCGCGGTCTTAAGTTTGAACTGGCGGCGGA
ATCGCCGCTGATGATGATCATGTTCAATACGCTGACTAAGCAGATCTACCAGCGTTACCCCCAGGCGACGATCAAATTGC
GCAACTGGGATTATGATTCACTGGAGGCGATTACCCGTGGCGAAGTAGATATCGGCTTTACCGGACGCGAAAGTCATCCT
CGCTCGCGGGAACTGCTCAGCCAGTTGCCGTTATCTATTGACTATGAAGTGTTATTTACTGACTTGCCTTGTGTCTGGTT
GCGAGAAGATCATCCGGCATTGCGCGAAGAGTGGGATCTGGAAACCTTTCTACGTTATCCACATATCAGCATTTGCTGGG
AACAGAGTGACACCTGGGCGCTGGACGATGTCCTTCATGAATTGGGGCGCGAACGCACCATTGCGTTGAGTTTACCGGGC
TTTGAAGCATCCTTATTTATGGCTGCACAACCGGAACAGCGGCTGATCGCAACTGCTCCCCGCTATTGCCAGCACTATAT
TGAACAGCATCAATTGCCATTAGTTGCCCTTCCGCTACCTTTCACTATTGCGCAGCTGGAAAAACTTAAAGTCCCCTTCA
CGTTGCTTTGGCACAAACGCAACAGCCACAACTCAAAAATTCTCTGGTTGCGCAAAACAATAAAAGCGCTCTATGCCCCT
CTTTTTTGA

Upstream 100 bases:

>100_bases
GTGGTTGGTATCGGCGCATGGAATATGCTGATCGGGATTCTGATTGCCTGTAGCATAGTGAGCCTGTTGCTGATTATGTT
CGTCACGCCTGGACGCCCCG

Downstream 100 bases:

>100_bases
GGAAAAACAGCCAACAGAAGATAAAGAGCAGTAGAGATCGGCGGATTAACGCTGTTTACAGTGAACTTACGTATCATTTA
ACCTGTCCATAAGTCAGGTA

Product: DNA-binding transcriptional regulator YidZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MPLMKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAE
WMQMSNLLLDKPHHETPRGLKFELAAESPLMMIMFNTLTKQIYQRYPQATIKLRNWDYDSLEAITRGEVDIGFTGRESHP
RSRELLSQLPLSIDYEVLFTDLPCVWLREDHPALREEWDLETFLRYPHISICWEQSDTWALDDVLHELGRERTIALSLPG
FEASLFMAAQPEQRLIATAPRYCQHYIEQHQLPLVALPLPFTIAQLEKLKVPFTLLWHKRNSHNSKILWLRKTIKALYAP
LF

Sequences:

>Translated_322_residues
MPLMKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAE
WMQMSNLLLDKPHHETPRGLKFELAAESPLMMIMFNTLTKQIYQRYPQATIKLRNWDYDSLEAITRGEVDIGFTGRESHP
RSRELLSQLPLSIDYEVLFTDLPCVWLREDHPALREEWDLETFLRYPHISICWEQSDTWALDDVLHELGRERTIALSLPG
FEASLFMAAQPEQRLIATAPRYCQHYIEQHQLPLVALPLPFTIAQLEKLKVPFTLLWHKRNSHNSKILWLRKTIKALYAP
LF
>Mature_321_residues
PLMKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEW
MQMSNLLLDKPHHETPRGLKFELAAESPLMMIMFNTLTKQIYQRYPQATIKLRNWDYDSLEAITRGEVDIGFTGRESHPR
SRELLSQLPLSIDYEVLFTDLPCVWLREDHPALREEWDLETFLRYPHISICWEQSDTWALDDVLHELGRERTIALSLPGF
EASLFMAAQPEQRLIATAPRYCQHYIEQHQLPLVALPLPFTIAQLEKLKVPFTLLWHKRNSHNSKILWLRKTIKALYAPL
F

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=318, Percent_Identity=86.7924528301887, Blast_Score=550, Evalue=1e-158,
Organism=Escherichia coli, GI87081766, Length=238, Percent_Identity=25.2100840336134, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786820, Length=82, Percent_Identity=42.6829268292683, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081684, Length=321, Percent_Identity=21.4953271028037, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37388; Mature: 37257

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLMKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEC
SPLGLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHETPRGLKFELAAESPLMMIMFNTLTK
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
QIYQRYPQATIKLRNWDYDSLEAITRGEVDIGFTGRESHPRSRELLSQLPLSIDYEVLFT
HHHHHCCCEEEEEECCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEE
DLPCVWLREDHPALREEWDLETFLRYPHISICWEQSDTWALDDVLHELGRERTIALSLPG
CCCEEEEECCCCHHHHHCCHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEECCC
FEASLFMAAQPEQRLIATAPRYCQHYIEQHQLPLVALPLPFTIAQLEKLKVPFTLLWHKR
CCEEEEEECCCHHHHHHCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCEEEEEECC
NSHNSKILWLRKTIKALYAPLF
CCCCCEEEHHHHHHHHHHCCCC
>Mature Secondary Structure 
PLMKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEC
SPLGLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHETPRGLKFELAAESPLMMIMFNTLTK
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
QIYQRYPQATIKLRNWDYDSLEAITRGEVDIGFTGRESHPRSRELLSQLPLSIDYEVLFT
HHHHHCCCEEEEEECCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEE
DLPCVWLREDHPALREEWDLETFLRYPHISICWEQSDTWALDDVLHELGRERTIALSLPG
CCCEEEEECCCCHHHHHCCHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEECCC
FEASLFMAAQPEQRLIATAPRYCQHYIEQHQLPLVALPLPFTIAQLEKLKVPFTLLWHKR
CCEEEEEECCCHHHHHHCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCEEEEEECC
NSHNSKILWLRKTIKALYAPLF
CCCCCEEEHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA