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The map label for this gene is rhaB [H]

Identifier: 218551111

GI number: 218551111

Start: 3960870

End: 3962339

Strand: Direct

Name: rhaB [H]

Synonym: EFER_3867

Alternate gene names: 218551111

Gene position: 3960870-3962339 (Clockwise)

Preceding gene: 218551108

Following gene: 218551112

Centisome position: 86.32

GC content: 54.76

Gene sequence:

>1470_bases
ATGACCTTTCGCAATTGTGTCGCCGTCGATCTCGGCGCATCCAGTGGGCGCGTGATGCTGGCGCGTTACGAGCGTGAATG
CCGCAGCCTGACGCTGCGCGAAATCCATCGTTTTAACAATGGCCTGCATAGCCAGAACGGTTATGTCACCTGGGATGTGG
ATAGCCTGGAAAGTGCCATTCGCCTTGGATTAAACAAGGTGTGCGAGGAAGGGATTCGTATCGATAGCATTGGGATTGAT
ACCTGGGGCGTGGACTTTGTGCTGCTCGACCAACAGGGTCAGCGTGTGGGCCTGCCCGTTGCTTATCGCGATAGCCGCAC
CCATGGTCTGATGGCGCTGGCACAAAAGCAACTCGGTAAAAGCGATATTTATCAGCGTAGCGGCATCCAGTTTTTGCCCT
TCAATACGCTCTATCAGCTGCGTGCGCTGACGGAGCAACAACCTGAACTTATTCCACACATTGCTCACGCTCTGCTGATG
CCGGATTACTTTAGTTATCGGCTGACCGGCAAGATGAACTGGGAGTATACCAACGCCACCACCACGCAACTGGTCAATAT
CAACAGCGACGACTGGGACGAAACGCTACTGGCGTGGAGCGGGGCCAACAAAGCCTGGTTTGGTCGCCCGACGCATCCGG
GTAATGTCATTGGTCACTGGATTTGCCCGCAAGGTAATGAGATTCCTGTCGTCGCCGTTGCCAGCCATGACACCGCCAGC
GCGGTTATCGCCTCGCCGTTAAATGGTTCACGCGCCGCTTATCTCTCTTCTGGCACCTGGTCATTGATGGGCTTCGAAAG
CCAGACGCCATTTACCAATGACACGGCGCTGGCAGCCAACATCACCAATGAAGGTGGGGCGGAAGGTCGCTATCGGGTGC
TGAAAAATATCATGGGCTTATGGCTGCTTCAGCGGGTGCTTCAGGAGCGGCAAATCAACGATCTTCCGGCGCTTATCGCC
GCGACACAGGCACTCCCGGCCTGCCGTTTTATCATCAATCCCAATGACGATCGCTTTATTAATCCTGACGAGATGTGCAG
CGAAATTCAGGCTGTGTGTCGGGAAACGGCGCAACCAATCCCGGAAAGTGATGCTGAACTGGGACGCTGTATTTTCGACA
GTCTGGCGCTGCTGTATGCCGATGTGTTGCATGAGCTGGCGCAGTTGCGCGGTGAAGATTTCTCGCAACTGCATATTGTC
GGCGGCGGCTGCCAGAACACGCTGCTCAATCAGTTATGTGCCGATGCCTGCGGTATTCGGGTGATTGCCGGGCCTGTTGA
AGCCTCGACGCTCGGCAATATCGGCATCCAGTTAATGGCGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCG
TCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACTCT
ACACGACAGACAAAGGAGCTTTGCGCATGA

Upstream 100 bases:

>100_bases
TGCCATGTTGCCAATGGCACATTTTCCTGTCAGTAACGAGAAGGTAGCGAATTCAGGCGCTTCTTAGACTGGTCGTAATG
AAATTCAGCAGGATCACATT

Downstream 100 bases:

>100_bases
CCACTCAACTGGAACAGGCCTGGGAGCTGGCGAAACAGCGTTTCGCGGCAGTAGGGATTGATGTCGAGGAGGCGCTGCGC
CAACTTGATCGTTTACCCGT

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCEEGIRIDSIGID
TWGVDFVLLDQQGQRVGLPVAYRDSRTHGLMALAQKQLGKSDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDETLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIA
ATQALPACRFIINPNDDRFINPDEMCSEIQAVCRETAQPIPESDAELGRCIFDSLALLYADVLHELAQLRGEDFSQLHIV
GGGCQNTLLNQLCADACGIRVIAGPVEASTLGNIGIQLMALDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS
TRQTKELCA

Sequences:

>Translated_489_residues
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCEEGIRIDSIGID
TWGVDFVLLDQQGQRVGLPVAYRDSRTHGLMALAQKQLGKSDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDETLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIA
ATQALPACRFIINPNDDRFINPDEMCSEIQAVCRETAQPIPESDAELGRCIFDSLALLYADVLHELAQLRGEDFSQLHIV
GGGCQNTLLNQLCADACGIRVIAGPVEASTLGNIGIQLMALDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS
TRQTKELCA
>Mature_488_residues
TFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCEEGIRIDSIGIDT
WGVDFVLLDQQGQRVGLPVAYRDSRTHGLMALAQKQLGKSDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMP
DYFSYRLTGKMNWEYTNATTTQLVNINSDDWDETLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASA
VIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAA
TQALPACRFIINPNDDRFINPDEMCSEIQAVCRETAQPIPESDAELGRCIFDSLALLYADVLHELAQLRGEDFSQLHIVG
GGCQNTLLNQLCADACGIRVIAGPVEASTLGNIGIQLMALDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHST
RQTKELCA

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=489, Percent_Identity=97.5460122699387, Blast_Score=993, Evalue=0.0,
Organism=Escherichia coli, GI1789168, Length=414, Percent_Identity=25.3623188405797, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 54033; Mature: 53902

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAI
CCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHH
RLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRTHGLMALAQKQLGK
HHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEECCEEEECCCCCHHHHHHHHHHCCH
SDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNWEYTNAT
HHHHHHCCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCC
TTQLVNINSDDWDETLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
EEEEEECCCCCCCCHHEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCC
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGL
HHEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLQERQINDLPALIAATQALPACRFIINPNDDRFINPDEMCSEIQAVCRETAQPI
HHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
PESDAELGRCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCE
VIAGPVEASTLGNIGIQLMALDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS
EEECCCCCCHHCCCCEEEEEEHHCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
TRQTKELCA
HHHHHHHCC
>Mature Secondary Structure 
TFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAI
CCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHH
RLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRTHGLMALAQKQLGK
HHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEECCEEEECCCCCHHHHHHHHHHCCH
SDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNWEYTNAT
HHHHHHCCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCC
TTQLVNINSDDWDETLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
EEEEEECCCCCCCCHHEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCC
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGL
HHEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLQERQINDLPALIAATQALPACRFIINPNDDRFINPDEMCSEIQAVCRETAQPI
HHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
PESDAELGRCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCE
VIAGPVEASTLGNIGIQLMALDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS
EEECCCCCCHHCCCCEEEEEEHHCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
TRQTKELCA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA