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The map label for this gene is yiaD [H]

Identifier: 218550833

GI number: 218550833

Start: 3631604

End: 3632263

Strand: Direct

Name: yiaD [H]

Synonym: EFER_3549

Alternate gene names: 218550833

Gene position: 3631604-3632263 (Clockwise)

Preceding gene: 218550831

Following gene: 218550834

Centisome position: 79.14

GC content: 54.09

Gene sequence:

>660_bases
ATGAAGAAACGTGTTTATCTTATTGCCGCCATTGTGAGCGGTGCTCTGGCAGTATCTGGTTGTACAACTAACCCCTACAC
TGGCGAGCGCGAAGCGGGTAACTCTGCCATCGGTGCGGGTCTGGGTTCACTTGTTGGTGCAGGCATTGGCGCGCTCTCTT
CTTCGAAAAAAGATCGCGGTAAAGGCGCACTGATTGGCGCAGCCGCTGGCGCTGCTCTGGGCGGCGGCGTTGGTTATTAC
ATGGATGTGCAGGAAGCGAAACTGCGCGACAAAATGCGCGGCACTGGTGTAAGCGTAACCCGCAGTGGGGATAACATTAT
CCTCAACATGCCAAATAACGTCACTTTCGACAGCAACAGCGCCACTCTAAAACCGGCAGGTGCGAACACGCTGACCGGCG
TTGCAATGGTACTGAAAGAGTACCCGAAAACCGCTGTAAACGTACTTGGCTATACTGACAGCACTGGTGGATACGACCTG
AATATGCGTCTGTCTCAGCAACGTGCAGACTCCGTTGCCAGCGCATTGATCACTCAGGGTGTGGCGGCTAACCGTATCAA
CACGCGTGGTATGGGTCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAAGCACAAAACCGTCGCGTAGAAA
TTACCTTAAGCCCGCTGTAA

Upstream 100 bases:

>100_bases
AATTTCCGAGTAATCCCAGGAAAAATCTTCATGTTCACACGGCATAATCTCCCGCCACGGCAACCGTGGCAAAGAATAAA
AAGGTTATTAAGGATTAACG

Downstream 100 bases:

>100_bases
TTCCCCAATGTCGGATGGCGGTTTCGTCATCCGACATTTATCATCTTGCCAGCGCTAATTTTCGCGTTAAGGTGTTCTCA
CTTTCAGGCAAGGAATCCCC

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKKRVYLIAAIVSGALAVSGCTTNPYTGEREAGNSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYY
MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSNSATLKPAGANTLTGVAMVLKEYPKTAVNVLGYTDSTGGYDL
NMRLSQQRADSVASALITQGVAANRINTRGMGPANPIASNSTAEGKAQNRRVEITLSPL

Sequences:

>Translated_219_residues
MKKRVYLIAAIVSGALAVSGCTTNPYTGEREAGNSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYY
MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSNSATLKPAGANTLTGVAMVLKEYPKTAVNVLGYTDSTGGYDL
NMRLSQQRADSVASALITQGVAANRINTRGMGPANPIASNSTAEGKAQNRRVEITLSPL
>Mature_219_residues
MKKRVYLIAAIVSGALAVSGCTTNPYTGEREAGNSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYY
MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSNSATLKPAGANTLTGVAMVLKEYPKTAVNVLGYTDSTGGYDL
NMRLSQQRADSVASALITQGVAANRINTRGMGPANPIASNSTAEGKAQNRRVEITLSPL

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=219, Percent_Identity=95.4337899543379, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=39.1666666666667, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22238; Mature: 22238

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRVYLIAAIVSGALAVSGCTTNPYTGEREAGNSAIGAGLGSLVGAGIGALSSSKKDRG
CCCEEEEHEEHHHCHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
KGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSNS
CCEEEECCCCHHHCCCEEEEEEHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEECCCC
ATLKPAGANTLTGVAMVLKEYPKTAVNVLGYTDSTGGYDLNMRLSQQRADSVASALITQG
CEECCCCCCHHHHHHHHHHHCCHHHEEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHCC
VAANRINTRGMGPANPIASNSTAEGKAQNRRVEITLSPL
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MKKRVYLIAAIVSGALAVSGCTTNPYTGEREAGNSAIGAGLGSLVGAGIGALSSSKKDRG
CCCEEEEHEEHHHCHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
KGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSNS
CCEEEECCCCHHHCCCEEEEEEHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEECCCC
ATLKPAGANTLTGVAMVLKEYPKTAVNVLGYTDSTGGYDLNMRLSQQRADSVASALITQG
CEECCCCCCHHHHHHHHHHHCCHHHEEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHCC
VAANRINTRGMGPANPIASNSTAEGKAQNRRVEITLSPL
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]