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The map label for this gene is ydfH [C]

Identifier: 218550517

GI number: 218550517

Start: 3297359

End: 3298024

Strand: Reverse

Name: ydfH [C]

Synonym: EFER_3211

Alternate gene names: 218550517

Gene position: 3298024-3297359 (Counterclockwise)

Preceding gene: 218550518

Following gene: 218550516

Centisome position: 71.87

GC content: 48.05

Gene sequence:

>666_bases
TTGCCGAGACCTAAGTTAGGGAAAATTAAGCTTCTTTCAGCGAAAGAACAGGTCGCAGCGGTATTACGCAAGGCCATACT
GTCTCGTGAGCTGGTGGAAGGACAGGAGATCACCCTGGAAGGTATTGCCAGTATGGTGGGCGTCTCCAGTATGCCCGTGC
GCGAAGCATTTCAGATTCTGGCGGCAGATGGACTGATTAAAGTACGACCAAACAAAGGTGCGGTTGTGCTGGGTATTAAG
GAACAAACTATTCGTGAACACTACGAGATCCGGGCATTGCTGGAGAGTGAAGCCGTGGCGAAAGCCTCGCGCCCTGGAGT
CGATATTTCACGCATTGCTCAGGTGTACTATTCGGCGGAGAAAGCCCTCGCTGATAATAATTCTGCTGAATATTCCGACC
TGAATCAGGCGTTTCATATGGAAATCTGGAACGCTGCGGGTAATGAAAAAATGAAAATGCTGCTTTCCAATATGTGGAAT
GGCCTGTCGATGGGTCATAAAGTGACGGAAGAGCAATATGCCGGTATTTCCATTCAGGAACATAAAGGTATATTAGAAGC
TCTTGAAAAAAATGATGAAAAACTGGCCCGCCAGCGTATGCATGACCATATTATTCGCTCAATGGAAAACATGCTAACCC
GCTACGTAGACGATCCCGCCGCCTGA

Upstream 100 bases:

>100_bases
GCCATCGGCAAAGGTGAACGCGATGAAATAGTGCAGGTCACTCTGCGTTACTTCCTCTCATTAGCAGAAATTATGCGTCA
ACATATGAAGGATTTGGAAA

Downstream 100 bases:

>100_bases
TCTGATCGTCTGCACCTCCTGTGCAGGCGATATTAATCATTGATATAACGAATAAATTTTCCATCGAAACCGTTTTCTGA
CGATCTTGATTTAGATCGCA

Product: regulatory protein, gntR family

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; GntR Family Regulatory Protein; GntR Domain-Containing Protein; Regulatory Protein; Transcriptional Regulator Gntr Family; GntR Domain Protein; Transcription Regulator; HTH-Type Transcriptional Regulator; Transcriptional Regulator GntR; Gntr Family Transcriptional Regulator; GntR Family Transcription Regulator; Transcriptional Regulator MdcY Family Protein; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator GntR-Family; GntR Transcriptional Regulator GntR; Regulatory Protein GntR Family; Transcription Regulator AsnC; Regulatory Protein GntR HTH

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MPRPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIASMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIK
EQTIREHYEIRALLESEAVAKASRPGVDISRIAQVYYSAEKALADNNSAEYSDLNQAFHMEIWNAAGNEKMKMLLSNMWN
GLSMGHKVTEEQYAGISIQEHKGILEALEKNDEKLARQRMHDHIIRSMENMLTRYVDDPAA

Sequences:

>Translated_221_residues
MPRPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIASMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIK
EQTIREHYEIRALLESEAVAKASRPGVDISRIAQVYYSAEKALADNNSAEYSDLNQAFHMEIWNAAGNEKMKMLLSNMWN
GLSMGHKVTEEQYAGISIQEHKGILEALEKNDEKLARQRMHDHIIRSMENMLTRYVDDPAA
>Mature_220_residues
PRPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIASMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIKE
QTIREHYEIRALLESEAVAKASRPGVDISRIAQVYYSAEKALADNNSAEYSDLNQAFHMEIWNAAGNEKMKMLLSNMWNG
LSMGHKVTEEQYAGISIQEHKGILEALEKNDEKLARQRMHDHIIRSMENMLTRYVDDPAA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24638; Mature: 24507

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIASMVGVSSMPVREAFQIL
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
AADGLIKVRPNKGAVVLGIKEQTIREHYEIRALLESEAVAKASRPGVDISRIAQVYYSAE
HHCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
KALADNNSAEYSDLNQAFHMEIWNAAGNEKMKMLLSNMWNGLSMGHKVTEEQYAGISIQE
HHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHH
HKGILEALEKNDEKLARQRMHDHIIRSMENMLTRYVDDPAA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PRPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIASMVGVSSMPVREAFQIL
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
AADGLIKVRPNKGAVVLGIKEQTIREHYEIRALLESEAVAKASRPGVDISRIAQVYYSAE
HHCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
KALADNNSAEYSDLNQAFHMEIWNAAGNEKMKMLLSNMWNGLSMGHKVTEEQYAGISIQE
HHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHH
HKGILEALEKNDEKLARQRMHDHIIRSMENMLTRYVDDPAA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA