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The map label for this gene is kdsD [H]

Identifier: 218550480

GI number: 218550480

Start: 3260693

End: 3261679

Strand: Direct

Name: kdsD [H]

Synonym: EFER_3174

Alternate gene names: 218550480

Gene position: 3260693-3261679 (Clockwise)

Preceding gene: 218550479

Following gene: 218550481

Centisome position: 71.06

GC content: 51.67

Gene sequence:

>987_bases
ATGTCGCATTTAGAGTTACAACCGGGTTTTGACTTTCAGAAAGCAGGCAAAGAAGTCCTGGCGATTGAACGTGAAGGCCT
GGCCGATCTTGATCAGTACATTGACCAGAATTTTACCCTTGCCTGTGAAAAACTGTTCTGGTGTACAGGTAAGGTGATCG
TAATGGGGATGGGTAAATCCGGGCATATTGGACGGAAAATGGCGGCCACCTTTGCCAGTACTGGAACACCATCATTTTTT
GTTCATCCTGGTGAAGCAGCGCATGGTGATTTGGGGATGGTCACTTCCCAGGACGTGGTGATTGCCATCTCCAATTCTGG
CGAATCCAGTGAAATTGCCGCATTGATTCCGGTACTTAAGCGCCTGCACGTTCCCCTGATATGCATAACCGGGCGACCCG
ATAGCAGCATGGCGCGTGCAGCAGATGTCCATCTCTGTGTTAAAGTACCGAAAGAAGCCTGCCCGCTGGGGCTGGCCCCA
ACCAGTAGCACAACAGCAACGTTAGTGATGGGTGACGCCCTCGCAGTGGCACTCCTGAAAGCACGCGGCTTTACTGCTGA
AGATTTTGCGCTTTCCCATCCGGGCGGTGCGTTAGGACGTAAACTCCTGTTACGTGTGAGCGACATTATGCATACGGGGG
ATGAGATCCCGCATGTCACTAAAAATGCCAGCCTGCGCGATGCTCTCCTGGAGATTACCCGAAAAAATCTCGGTATGACG
GTGATTTGCGATGACAACATGAAGATTGACGGTATTTTCACCGATGGTGATTTGCGCCGCGTCTTCGATATGGGTGTCGA
TGTGCGCCAGTTAGGCATTGCCGATGTTATGACGCCAGGGGGCATTCGTGTGCGCCCGGGCATTCTTGCCGTTGAAGCAC
TGAATCTAATGCAGTCTCGCCATATCACTTCCGTACTGGTTGCTGATGGCGACCATTTACTCGGTGTGTTACATATGCAT
GATCTGCTGCGAGCAGGCGTAGTTTAG

Upstream 100 bases:

>100_bases
GGTCGCAGTGTCGGTGTGCTGTTGACCGGTGGTTTTGTTTTGTGGCTGGCGATGCTGCACTGGCTTTCGCCCCTTCTCGT
TGAATGACTGGAAACGCATT

Downstream 100 bases:

>100_bases
AAATCAAGGATAACCAAATGAGTACAGCAGGTACGTCGCTTGCGACCTGTTACGGCCCCGTAAGTACTGAGGTCATGGCA
AAAGCAGAGAAAATCCAGTT

Product: D-arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MSHLELQPGFDFQKAGKEVLAIEREGLADLDQYIDQNFTLACEKLFWCTGKVIVMGMGKSGHIGRKMAATFASTGTPSFF
VHPGEAAHGDLGMVTSQDVVIAISNSGESSEIAALIPVLKRLHVPLICITGRPDSSMARAADVHLCVKVPKEACPLGLAP
TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVTKNASLRDALLEITRKNLGMT
VICDDNMKIDGIFTDGDLRRVFDMGVDVRQLGIADVMTPGGIRVRPGILAVEALNLMQSRHITSVLVADGDHLLGVLHMH
DLLRAGVV

Sequences:

>Translated_328_residues
MSHLELQPGFDFQKAGKEVLAIEREGLADLDQYIDQNFTLACEKLFWCTGKVIVMGMGKSGHIGRKMAATFASTGTPSFF
VHPGEAAHGDLGMVTSQDVVIAISNSGESSEIAALIPVLKRLHVPLICITGRPDSSMARAADVHLCVKVPKEACPLGLAP
TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVTKNASLRDALLEITRKNLGMT
VICDDNMKIDGIFTDGDLRRVFDMGVDVRQLGIADVMTPGGIRVRPGILAVEALNLMQSRHITSVLVADGDHLLGVLHMH
DLLRAGVV
>Mature_327_residues
SHLELQPGFDFQKAGKEVLAIEREGLADLDQYIDQNFTLACEKLFWCTGKVIVMGMGKSGHIGRKMAATFASTGTPSFFV
HPGEAAHGDLGMVTSQDVVIAISNSGESSEIAALIPVLKRLHVPLICITGRPDSSMARAADVHLCVKVPKEACPLGLAPT
SSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVTKNASLRDALLEITRKNLGMTV
ICDDNMKIDGIFTDGDLRRVFDMGVDVRQLGIADVMTPGGIRVRPGILAVEALNLMQSRHITSVLVADGDHLLGVLHMHD
LLRAGVV

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=328, Percent_Identity=93.9024390243902, Blast_Score=630, Evalue=0.0,
Organism=Escherichia coli, GI87082151, Length=316, Percent_Identity=45.253164556962, Blast_Score=278, Evalue=3e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 35000; Mature: 34869

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHLELQPGFDFQKAGKEVLAIEREGLADLDQYIDQNFTLACEKLFWCTGKVIVMGMGKS
CCCCCCCCCCCHHHCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCC
GHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTSQDVVIAISNSGESSEIAALIPVLK
CCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHH
RLHVPLICITGRPDSSMARAADVHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLK
HCCCCEEEEECCCCCHHHHHHCEEEEEECCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHH
ARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVTKNASLRDALLEITRKNLGMT
HCCCCCHHCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEE
VICDDNMKIDGIFTDGDLRRVFDMGVDVRQLGIADVMTPGGIRVRPGILAVEALNLMQSR
EEECCCEEEEEEEECCHHHHHHHCCCCHHHHCHHHHCCCCCEEECCCCHHHHHHHHHHHC
HITSVLVADGDHLLGVLHMHDLLRAGVV
CCEEEEEECCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SHLELQPGFDFQKAGKEVLAIEREGLADLDQYIDQNFTLACEKLFWCTGKVIVMGMGKS
CCCCCCCCCCHHHCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCC
GHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTSQDVVIAISNSGESSEIAALIPVLK
CCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHH
RLHVPLICITGRPDSSMARAADVHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLK
HCCCCEEEEECCCCCHHHHHHCEEEEEECCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHH
ARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVTKNASLRDALLEITRKNLGMT
HCCCCCHHCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEE
VICDDNMKIDGIFTDGDLRRVFDMGVDVRQLGIADVMTPGGIRVRPGILAVEALNLMQSR
EEECCCEEEEEEEECCHHHHHHHCCCCHHHHCHHHHCCCCCEEECCCCHHHHHHHHHHHC
HITSVLVADGDHLLGVLHMHDLLRAGVV
CCEEEEEECCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]