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The map label for this gene is yjiR [H]

Identifier: 218550396

GI number: 218550396

Start: 3173252

End: 3174664

Strand: Direct

Name: yjiR [H]

Synonym: EFER_3088

Alternate gene names: 218550396

Gene position: 3173252-3174664 (Clockwise)

Preceding gene: 218550392

Following gene: 218550398

Centisome position: 69.15

GC content: 54.99

Gene sequence:

>1413_bases
ATGACGCGTTATCAACATCTGGCGACTCTACTTGCCAGGCGGATTGAGCAAGGGCTGTATCGTCACGGGGAGAAATTGCC
GTCGGTGCGCAGCTTGAGTCAGGAGCACGGCGTCAGCATCAGCACCGTGCAGCAGGCATATCAGACGCTGGAGACAATGA
AGCTCATCACTCCGCAGCCGCGTTCAGGTTATTTTGTTGCGCAACGCAAAGCCCAGCCGCCAGTACCGCCAATGACGCGT
CCGGTGCAGCGCCCGGTGGAAATTACCCAGTGGGATCAGGTGCTGGATATGCTGGAGGCACATAGCAACAGTGCCATTGT
CCCGTTAAGCAAAAGCACACCGGATGTCGAAGCGCCCAGCCTGAAACCGCTCTGGCGGGAGCTAAGCCGGGTGGTGCAGC
ATAATCTGCAAACCGTTCTCGGTTATGACTTGTTAGCCGGTCAGCGAGTGTTGCGAGAGCAGATTGCCCGCCTGATGCTC
GACAGCGGCTCGGTGGTCACCGCCGATGACATCATTATCACCAGCGGCTGCCATAACTCGATGTCGCTGGCGTTAATGGC
GGTGTGTAAACCGGGCGATATTGTCGCGGTCGAATCCCCCTGTTATTACGGTTCGATGCAGATGCTGCGCGGCATGGGCG
TGAAAGTGATTGAAATCCCAACCGATCCAGAAACTGGCATCAGCGTTGAAGCGCTGGAACTGGCGCTGGAACAGTGGCCG
ATTAAAGGCATCATTCTGGTGCCAAACTGTAATAATCCGCTGGGATTTATTATGCCGGACGCACGCAAACGGGCCGTTCT
CTCTCTCGCTCAGCATCATGATATTGTGATTTTTGAAGATGATGTCTACGGCGAACTGGCGACGGAGTATCCGCGCCCGC
GGACCATTCATTCCTGGGATATCGACGGCCGGGTGCTGCTGTGCAGTTCGTTCAGTAAAAGCATTGCACCAGGCCTGCGC
GTGGGCTGGGTCGCACCGGGGCGCTATCACGATAAACTGCTGCATATGAAATATGCCATCAGCAGCTTTAATGTACCGTC
CACGCAAATGGCGGCGGCAACGTTTGTGCTGGAAGGTCACTATCATCGCCATATCCGGCGGATGCGGCAGAATTATCAGC
GCAATTTGGCGCTTTATACCTGCTGGATACGGGAATATTTTCCCTGCGAAATCTGTATTACGCGCCCGAAAGGCGGATTT
TTACTGTGGATAGAATTGCCTGAACAGGTCGATATGGTCTGCGTTGCGCGACAGCTGTACCGCATGAAAATCCAGGTAGC
GGCAGGCTCGATTTTCTCGGCTTCCGGCAAATACCGTAATTGTCTACGCATCAACTGCGCTTTGCCGCTCAGCGAAACCT
ATCGCGAAGCACTGAAGCAAATTGGCGGGGCCGTGTATCGGGCAATGGAATGA

Upstream 100 bases:

>100_bases
TATTTAACATACAGACAGGTTAAAACAGCATCTGCATCCGGTTTTTTAGCCTCATCTGTACTGGTTTTTCTCTCTGTATG
GTCCAAATAAGGAATACAGC

Downstream 100 bases:

>100_bases
ATTCGAAATAGTGGCGAAGCGCCTGATTTCCTCTCATGAATAACCTGTGACTCGTTTTATCTTTGCTGGGTCATCGCCAC
GTTCCAGCCTGAATTAGGCA

Product: bifunctional DNA-binding transcriptional regulator/aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MTRYQHLATLLARRIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTLETMKLITPQPRSGYFVAQRKAQPPVPPMTR
PVQRPVEITQWDQVLDMLEAHSNSAIVPLSKSTPDVEAPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLML
DSGSVVTADDIIITSGCHNSMSLALMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEALELALEQWP
IKGIILVPNCNNPLGFIMPDARKRAVLSLAQHHDIVIFEDDVYGELATEYPRPRTIHSWDIDGRVLLCSSFSKSIAPGLR
VGWVAPGRYHDKLLHMKYAISSFNVPSTQMAAATFVLEGHYHRHIRRMRQNYQRNLALYTCWIREYFPCEICITRPKGGF
LLWIELPEQVDMVCVARQLYRMKIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGGAVYRAME

Sequences:

>Translated_470_residues
MTRYQHLATLLARRIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTLETMKLITPQPRSGYFVAQRKAQPPVPPMTR
PVQRPVEITQWDQVLDMLEAHSNSAIVPLSKSTPDVEAPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLML
DSGSVVTADDIIITSGCHNSMSLALMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEALELALEQWP
IKGIILVPNCNNPLGFIMPDARKRAVLSLAQHHDIVIFEDDVYGELATEYPRPRTIHSWDIDGRVLLCSSFSKSIAPGLR
VGWVAPGRYHDKLLHMKYAISSFNVPSTQMAAATFVLEGHYHRHIRRMRQNYQRNLALYTCWIREYFPCEICITRPKGGF
LLWIELPEQVDMVCVARQLYRMKIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGGAVYRAME
>Mature_469_residues
TRYQHLATLLARRIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTLETMKLITPQPRSGYFVAQRKAQPPVPPMTRP
VQRPVEITQWDQVLDMLEAHSNSAIVPLSKSTPDVEAPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLMLD
SGSVVTADDIIITSGCHNSMSLALMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEALELALEQWPI
KGIILVPNCNNPLGFIMPDARKRAVLSLAQHHDIVIFEDDVYGELATEYPRPRTIHSWDIDGRVLLCSSFSKSIAPGLRV
GWVAPGRYHDKLLHMKYAISSFNVPSTQMAAATFVLEGHYHRHIRRMRQNYQRNLALYTCWIREYFPCEICITRPKGGFL
LWIELPEQVDMVCVARQLYRMKIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGGAVYRAME

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=284, Percent_Identity=28.8732394366197, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI33469970, Length=284, Percent_Identity=28.8732394366197, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI4507369, Length=236, Percent_Identity=23.3050847457627, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1790797, Length=470, Percent_Identity=98.2978723404255, Blast_Score=955, Evalue=0.0,
Organism=Escherichia coli, GI1787710, Length=463, Percent_Identity=34.5572354211663, Blast_Score=290, Evalue=1e-79,
Organism=Caenorhabditis elegans, GI17567663, Length=344, Percent_Identity=22.9651162790698, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321236, Length=185, Percent_Identity=30.2702702702703, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6321929, Length=373, Percent_Identity=24.3967828418231, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6321000, Length=419, Percent_Identity=24.1050119331742, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21356535, Length=334, Percent_Identity=24.8502994011976, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI18859735, Length=274, Percent_Identity=20.8029197080292, Blast_Score=65, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53009; Mature: 52878

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYQHLATLLARRIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTLETMKLITPQP
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
RSGYFVAQRKAQPPVPPMTRPVQRPVEITQWDQVLDMLEAHSNSAIVPLSKSTPDVEAPS
CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
LKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLMLDSGSVVTADDIIITSGCHNS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC
MSLALMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEALELALEQWP
CEEEEEEEECCCCEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCC
IKGIILVPNCNNPLGFIMPDARKRAVLSLAQHHDIVIFEDDVYGELATEYPRPRTIHSWD
CCEEEEEECCCCCCEEECCCHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCEEEEC
IDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLLHMKYAISSFNVPSTQMAAATFVLEGH
CCCCEEEEECCHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHEECCH
YHRHIRRMRQNYQRNLALYTCWIREYFPCEICITRPKGGFLLWIELPEQVDMVCVARQLY
HHHHHHHHHHHHHCCEEEEEEEHHHCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHH
RMKIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGGAVYRAME
HEEEEEECCCEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRYQHLATLLARRIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTLETMKLITPQP
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
RSGYFVAQRKAQPPVPPMTRPVQRPVEITQWDQVLDMLEAHSNSAIVPLSKSTPDVEAPS
CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
LKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLMLDSGSVVTADDIIITSGCHNS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC
MSLALMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEALELALEQWP
CEEEEEEEECCCCEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCC
IKGIILVPNCNNPLGFIMPDARKRAVLSLAQHHDIVIFEDDVYGELATEYPRPRTIHSWD
CCEEEEEECCCCCCEEECCCHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCEEEEC
IDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLLHMKYAISSFNVPSTQMAAATFVLEGH
CCCCEEEEECCHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHEECCH
YHRHIRRMRQNYQRNLALYTCWIREYFPCEICITRPKGGFLLWIELPEQVDMVCVARQLY
HHHHHHHHHHHHHCCEEEEEEEHHHCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHH
RMKIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGGAVYRAME
HEEEEEECCCEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]