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The map label for this gene is tdcF [C]

Identifier: 218550366

GI number: 218550366

Start: 3132992

End: 3133387

Strand: Reverse

Name: tdcF [C]

Synonym: EFER_3058

Alternate gene names: 218550366

Gene position: 3133387-3132992 (Counterclockwise)

Preceding gene: 218550367

Following gene: 218550365

Centisome position: 68.28

GC content: 50.76

Gene sequence:

>396_bases
GTGAATATGAGCATTAAACGTTACGGTACGGAAGGTGGAACAGGCACTGGCGGGCAGCATTTGCCTTTTGCCAGGGCGGT
TGAGGCGGGCGGCTGGCTGTACGTCTCCGGGCAAACACCCATGAAAAACGGTGAAGTGGTAGAAGGCGGAATCGTTGAAC
AGTCACGACTGGCGATCCAAAACTGTGTCGACATCATGACTGAAGCCGGTTATAGCCTGGCGGATGTGGTTCACGTGAAA
GTGATCCTGACCGACGCCCGCTATTTCCAGTCATTTAATAAAGTATTCAGAGAATTTTTTGGCGAGAATCCGCCTGCACG
TATTTGTTGTGTGGCTGATCTGGTTGTCGATTGTAAAGTCGAAGTCGATGTGACCTGTTATAACGCGACCCGCTAA

Upstream 100 bases:

>100_bases
TGAGGCGGTGATGGTGAACGGCGTTATGAGCTATGGTCGCGATAAACATATTACAGGCCGTGCGGGACGCTTCCTGCGCC
GGCAGACCTCACATTAAGGA

Downstream 100 bases:

>100_bases
TAAATTTAAGAATTAAAAAAACAGACCGCAATTGAGTGCTGAATACATTCAGCACTCCGGGAACTCTTACATTATTCTCT
CTCTACTGGCAGGATGTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MNMSIKRYGTEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVEQSRLAIQNCVDIMTEAGYSLADVVHVK
VILTDARYFQSFNKVFREFFGENPPARICCVADLVVDCKVEVDVTCYNATR

Sequences:

>Translated_131_residues
MNMSIKRYGTEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVEQSRLAIQNCVDIMTEAGYSLADVVHVK
VILTDARYFQSFNKVFREFFGENPPARICCVADLVVDCKVEVDVTCYNATR
>Mature_131_residues
MNMSIKRYGTEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVEQSRLAIQNCVDIMTEAGYSLADVVHVK
VILTDARYFQSFNKVFREFFGENPPARICCVADLVVDCKVEVDVTCYNATR

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=105, Percent_Identity=32.3809523809524, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87082213, Length=108, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322138, Length=104, Percent_Identity=35.5769230769231, Blast_Score=73, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6320899, Length=106, Percent_Identity=30.188679245283, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14315; Mature: 14315

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMSIKRYGTEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVEQSRLAIQ
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCEEECCCCCHHHHHHH
NCVDIMTEAGYSLADVVHVKVILTDARYFQSFNKVFREFFGENPPARICCVADLVVDCKV
HHHHHHHHCCCCHHHHEEEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECEE
EVDVTCYNATR
EEEEEEEECCC
>Mature Secondary Structure
MNMSIKRYGTEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKNGEVVEGGIVEQSRLAIQ
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCEEECCCCCHHHHHHH
NCVDIMTEAGYSLADVVHVKVILTDARYFQSFNKVFREFFGENPPARICCVADLVVDCKV
HHHHHHHHCCCCHHHHEEEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECEE
EVDVTCYNATR
EEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]