| Definition | Escherichia fergusonii ATCC 35469 chromosome, complete genome. |
|---|---|
| Accession | NC_011740 |
| Length | 4,588,711 |
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The map label for this gene is yqiG [H]
Identifier: 218550295
GI number: 218550295
Start: 3054695
End: 3057217
Strand: Direct
Name: yqiG [H]
Synonym: EFER_2987
Alternate gene names: 218550295
Gene position: 3054695-3057217 (Clockwise)
Preceding gene: 218550294
Following gene: 218550296
Centisome position: 66.57
GC content: 46.81
Gene sequence:
>2523_bases ATGAACAATAAAAACACGTTTACCCGGGACAGATTATCCCATGCAATTAAAAATGCCCTGTCTGGCGTTGTGTGTTCGCT ACTCTTCGTTTTGCCAGTCCACGCAGTAGAATTCAACGTCGATATGATTGACGCAGAAGACCGCGAGAATATTGATATCT CTCGTTTTGAGAAAAAAGGCTACATAACCCCAGGTAAATATCTGGTCCGTGTGCAAATCAATAAAAATATATTACCGAAA GCATTAATACTGGAGTGGGTAAAAGCAGATAATGAAAGCGGTTCATTACTCTGCTTAACTAGAGAAAATTTAATTAATTT TGGCCTGCACACAGACTTTATTGAATCATTACAAAGCACTGCTGGAAGCGAGTGTCTCGATTTAAGTCAACGACAGGAAT TATCTGTACGGCTAGATAAATCTACGATGATATTATCACTTAGCATTCCCCAGGCATGGTTGAAATACCAGGCAACAAAC TGGACGCCGCCAGAATTTTGGGATGACGGTATCACCGGATTTATCCTCGACTATAACGTATACGCCAGCCAGTACGATCC ACATCACGGAGACAGCACCCAGAATATCAGTTCCTACGGTACTTTAGGTTTCAACCTCGGTGCATGGCGTTTGCGTAGCG ATTATCAATACAATCAGAATTTTGCTGATGGCCGCTCGGTAAACCACGATAGCGAATTTGCGCGAAATTATCTGTTTCGC CCGATTCCCTCATGGTCGTCAAAATTCACCATGGGACAGTACGACCTGAGTTCCAATCTTTACGATACCTTCCATTTTAC TGGCGCATCACTGGAAAGTGATGAAAGTATGCTGCCGCCAGATCTACAGGGTTATGCGCCGCAAATCACCGGCATCGCGC AGACCAACGCCAAAGTGACTGTAGCACAAAATGGTCGTGTACTTTATCAGACCACTGTTGCGCCTGGGCCGTTTAACATT TCTGATTTGGGCCAGTCGTTCCAGGGTCAACTGGATGTCACTGTTGAAGAAGAAGATGGCCGTACCAATACCTTTCAGGT CGGTTCCGCTTCCATCCCCTATTTAACCCGTAAAGGGCAAGTACGCTACAAAACGTCGCTGGGAAAACCAACATCTGTCG GACATAACGATATTAATAACCCATTTTTCTGGACGGCAGAAGCCTCCTGGGGCTGGCTGAACAATGTGTCGCTCTATGGC GGCGGCATGTTCACTGCGGATGATTACCAGGCGATCACCACTGGCATCGGTTTTAACCTCAATCAATTTGGTTCGCTTTC TTTCGATGTCACCGGAGCTGATGCCTCTTTACAGCGACAAAATAGGGACAATTTGCGTGGTTACAGCTATCGGTTTAACT ATGCGAAACATTTCGAGTCAACGGGGAGTCAGATTACTTTTGCAGGGTATCGCTTCTCAGATAAAGATTACGTATCGATG GGTGAGTATCTCTCCTCGAGAAATGGTGATGATTCCATTGATAACGAGAAAGAAAATTATGTTATTTCCCTGAACCAGTA CTTTGAGACGTTGGAGATGAACTCTTATCTTAACGTTACACGTAATACCTACTGGGACAGCCCTAGCAATACCAACTACT CGATATCAGTAAGCAAAAACTTTGATATTGGCGATTTCAAAGGCATTTCCGCATCGCTGGCGGTGAGTCGTATTCGCTGG GATGATGACGAGGAAAATCAGTATTACTTCTCTTTCTCTCTGCCGTTACAGCAAAGTCGCAACATCTCCTACAGTATGCA GCGCACGGATGGCAGTAACACCTCGCAAATGATTTCCTGGTATGACTCGTCGGATCGCAACAATGTCTGGAATATTTCTG CGTCAGCAACGGACGACAATATTCGCGATGGCGAACCAACGTTGCGCGGCAGCTACCAGCACTATTCACCATGGGGCCGT CTGAACATTAACGGCAGCGTGCAGCCGAATCAGTACAATTCTGTTACCGCAGGCTGGTACGGTTCACTTACCGCTACGCG TCATGGGGTCGCTCTTCACGATTATAGCTACGGCGATAACGCTCGCATGATGGTCGATACCGCAGGGATCTCCGGCGTTG AAATCAACTCTAACCGTACCGTTACCAACGGGCTGGGCATTGCCGTTGTACCTTCGTTATCGAACTACACCACCTCCATG TTACGGGTGAACAATAACGATCTACCAGAAGGTGTTGATGTCGAAAACTCGGTTATTCGCACCACGCTCACCCAGGGTGC CATCGGCTACGCAAAACTGAATGCCACCACCGGTTACCAAATCGTCGGCGTTATCCGCCAGGAAAATGGTCGCTTTCCAC CACTGGGGGTGAATGTCACGGATAAAGCGACAGGTAAAGATGTGGGCCTGGTGGCGGAAGATGGCTTTGTTTATCTCAGC GGGATTCAGGAAAACAGCACCCTGCGTTTAACCTGGGGTGATAACTCCTGCGAAATTACCCCCCCTAACCAAAGTAACAT CAGCGAAAGTGCCATTATTTTGCCTTGTAAAACAGTCAACTAA
Upstream 100 bases:
>100_bases TCGACTACAAGTAATCGGCAGTTAATACCCACACAACACCAGGCGGTAAAGCCGATGAAATTTCATCGGCAACTTTGGGT CTTTTTAGAAATGGATTTTT
Downstream 100 bases:
>100_bases TTCAGGATGAATAAAATGAAATCGCTATTAACCGCAACAGGAATGATTTGTTTACTGGGGATCTGCAACTTCGCCCAGGC GACAGTCTCCCCCGACAGGA
Product: outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 840
Protein sequence:
>840_residues MNNKNTFTRDRLSHAIKNALSGVVCSLLFVLPVHAVEFNVDMIDAEDRENIDISRFEKKGYITPGKYLVRVQINKNILPK ALILEWVKADNESGSLLCLTRENLINFGLHTDFIESLQSTAGSECLDLSQRQELSVRLDKSTMILSLSIPQAWLKYQATN WTPPEFWDDGITGFILDYNVYASQYDPHHGDSTQNISSYGTLGFNLGAWRLRSDYQYNQNFADGRSVNHDSEFARNYLFR PIPSWSSKFTMGQYDLSSNLYDTFHFTGASLESDESMLPPDLQGYAPQITGIAQTNAKVTVAQNGRVLYQTTVAPGPFNI SDLGQSFQGQLDVTVEEEDGRTNTFQVGSASIPYLTRKGQVRYKTSLGKPTSVGHNDINNPFFWTAEASWGWLNNVSLYG GGMFTADDYQAITTGIGFNLNQFGSLSFDVTGADASLQRQNRDNLRGYSYRFNYAKHFESTGSQITFAGYRFSDKDYVSM GEYLSSRNGDDSIDNEKENYVISLNQYFETLEMNSYLNVTRNTYWDSPSNTNYSISVSKNFDIGDFKGISASLAVSRIRW DDDEENQYYFSFSLPLQQSRNISYSMQRTDGSNTSQMISWYDSSDRNNVWNISASATDDNIRDGEPTLRGSYQHYSPWGR LNINGSVQPNQYNSVTAGWYGSLTATRHGVALHDYSYGDNARMMVDTAGISGVEINSNRTVTNGLGIAVVPSLSNYTTSM LRVNNNDLPEGVDVENSVIRTTLTQGAIGYAKLNATTGYQIVGVIRQENGRFPPLGVNVTDKATGKDVGLVAEDGFVYLS GIQENSTLRLTWGDNSCEITPPNQSNISESAIILPCKTVN
Sequences:
>Translated_840_residues MNNKNTFTRDRLSHAIKNALSGVVCSLLFVLPVHAVEFNVDMIDAEDRENIDISRFEKKGYITPGKYLVRVQINKNILPK ALILEWVKADNESGSLLCLTRENLINFGLHTDFIESLQSTAGSECLDLSQRQELSVRLDKSTMILSLSIPQAWLKYQATN WTPPEFWDDGITGFILDYNVYASQYDPHHGDSTQNISSYGTLGFNLGAWRLRSDYQYNQNFADGRSVNHDSEFARNYLFR PIPSWSSKFTMGQYDLSSNLYDTFHFTGASLESDESMLPPDLQGYAPQITGIAQTNAKVTVAQNGRVLYQTTVAPGPFNI SDLGQSFQGQLDVTVEEEDGRTNTFQVGSASIPYLTRKGQVRYKTSLGKPTSVGHNDINNPFFWTAEASWGWLNNVSLYG GGMFTADDYQAITTGIGFNLNQFGSLSFDVTGADASLQRQNRDNLRGYSYRFNYAKHFESTGSQITFAGYRFSDKDYVSM GEYLSSRNGDDSIDNEKENYVISLNQYFETLEMNSYLNVTRNTYWDSPSNTNYSISVSKNFDIGDFKGISASLAVSRIRW DDDEENQYYFSFSLPLQQSRNISYSMQRTDGSNTSQMISWYDSSDRNNVWNISASATDDNIRDGEPTLRGSYQHYSPWGR LNINGSVQPNQYNSVTAGWYGSLTATRHGVALHDYSYGDNARMMVDTAGISGVEINSNRTVTNGLGIAVVPSLSNYTTSM LRVNNNDLPEGVDVENSVIRTTLTQGAIGYAKLNATTGYQIVGVIRQENGRFPPLGVNVTDKATGKDVGLVAEDGFVYLS GIQENSTLRLTWGDNSCEITPPNQSNISESAIILPCKTVN >Mature_840_residues MNNKNTFTRDRLSHAIKNALSGVVCSLLFVLPVHAVEFNVDMIDAEDRENIDISRFEKKGYITPGKYLVRVQINKNILPK ALILEWVKADNESGSLLCLTRENLINFGLHTDFIESLQSTAGSECLDLSQRQELSVRLDKSTMILSLSIPQAWLKYQATN WTPPEFWDDGITGFILDYNVYASQYDPHHGDSTQNISSYGTLGFNLGAWRLRSDYQYNQNFADGRSVNHDSEFARNYLFR PIPSWSSKFTMGQYDLSSNLYDTFHFTGASLESDESMLPPDLQGYAPQITGIAQTNAKVTVAQNGRVLYQTTVAPGPFNI SDLGQSFQGQLDVTVEEEDGRTNTFQVGSASIPYLTRKGQVRYKTSLGKPTSVGHNDINNPFFWTAEASWGWLNNVSLYG GGMFTADDYQAITTGIGFNLNQFGSLSFDVTGADASLQRQNRDNLRGYSYRFNYAKHFESTGSQITFAGYRFSDKDYVSM GEYLSSRNGDDSIDNEKENYVISLNQYFETLEMNSYLNVTRNTYWDSPSNTNYSISVSKNFDIGDFKGISASLAVSRIRW DDDEENQYYFSFSLPLQQSRNISYSMQRTDGSNTSQMISWYDSSDRNNVWNISASATDDNIRDGEPTLRGSYQHYSPWGR LNINGSVQPNQYNSVTAGWYGSLTATRHGVALHDYSYGDNARMMVDTAGISGVEINSNRTVTNGLGIAVVPSLSNYTTSM LRVNNNDLPEGVDVENSVIRTTLTQGAIGYAKLNATTGYQIVGVIRQENGRFPPLGVNVTDKATGKDVGLVAEDGFVYLS GIQENSTLRLTWGDNSCEITPPNQSNISESAIILPCKTVN
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI87081778, Length=820, Percent_Identity=42.9268292682927, Blast_Score=652, Evalue=0.0, Organism=Escherichia coli, GI1787172, Length=815, Percent_Identity=28.8343558282209, Blast_Score=285, Evalue=8e-78, Organism=Escherichia coli, GI1786332, Length=876, Percent_Identity=28.7671232876712, Blast_Score=284, Evalue=2e-77, Organism=Escherichia coli, GI1790772, Length=855, Percent_Identity=27.953216374269, Blast_Score=283, Evalue=3e-77, Organism=Escherichia coli, GI1789533, Length=839, Percent_Identity=30.2741358760429, Blast_Score=278, Evalue=1e-75, Organism=Escherichia coli, GI1786744, Length=851, Percent_Identity=27.497062279671, Blast_Score=242, Evalue=6e-65, Organism=Escherichia coli, GI1788427, Length=606, Percent_Identity=29.7029702970297, Blast_Score=209, Evalue=7e-55, Organism=Escherichia coli, GI1789610, Length=836, Percent_Identity=23.444976076555, Blast_Score=108, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 93744; Mature: 93744
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNKNTFTRDRLSHAIKNALSGVVCSLLFVLPVHAVEFNVDMIDAEDRENIDISRFEKKG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCHHHHHCCC YITPGKYLVRVQINKNILPKALILEWVKADNESGSLLCLTRENLINFGLHTDFIESLQST CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHCCCCCHHHHHHHHHH AGSECLDLSQRQELSVRLDKSTMILSLSIPQAWLKYQATNWTPPEFWDDGITGFILDYNV CCCHHHCCCCCCCEEEEECCCEEEEEEECCHHHHEEECCCCCCCCHHCCCCEEEEEEEEE YASQYDPHHGDSTQNISSYGTLGFNLGAWRLRSDYQYNQNFADGRSVNHDSEFARNYLFR EECCCCCCCCCCCCCCHHCCCEEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCC PIPSWSSKFTMGQYDLSSNLYDTFHFTGASLESDESMLPPDLQGYAPQITGIAQTNAKVT CCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE VAQNGRVLYQTTVAPGPFNISDLGQSFQGQLDVTVEEEDGRTNTFQVGSASIPYLTRKGQ EEECCEEEEEEECCCCCCCHHHHCCCCCCEEEEEEECCCCCCCEEEECCCCCCEEECCCC VRYKTSLGKPTSVGHNDINNPFFWTAEASWGWLNNVSLYGGGMFTADDYQAITTGIGFNL EEEEECCCCCCCCCCCCCCCCEEEEEECCCCEECCEEEECCEEEECCCCEEEEECCCCCC NQFGSLSFDVTGADASLQRQNRDNLRGYSYRFNYAKHFESTGSQITFAGYRFSDKDYVSM CCCCCEEEEEECCCHHHHHCCCCCCCCEEEEECHHHHHHCCCCEEEEEEEEECCCHHHHH GEYLSSRNGDDSIDNEKENYVISLNQYFETLEMNSYLNVTRNTYWDSPSNTNYSISVSKN HHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCEEEEECCEECCCCCCCCEEEEEECC FDIGDFKGISASLAVSRIRWDDDEENQYYFSFSLPLQQSRNISYSMQRTDGSNTSQMISW CCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCHHHCCCCEEEEEECCCCCHHHEEEE YDSSDRNNVWNISASATDDNIRDGEPTLRGSYQHYSPWGRLNINGSVQPNQYNSVTAGWY ECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCC GSLTATRHGVALHDYSYGDNARMMVDTAGISGVEINSNRTVTNGLGIAVVPSLSNYTTSM CCEEECCCCEEEEECCCCCCCEEEEEECCCCEEEECCCCEEECCCCEEEECCCCCCEEEE LRVNNNDLPEGVDVENSVIRTTLTQGAIGYAKLNATTGYQIVGVIRQENGRFPPLGVNVT EEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCEEC DKATGKDVGLVAEDGFVYLSGIQENSTLRLTWGDNSCEITPPNQSNISESAIILPCKTVN CCCCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCCEECCCCCCCCCCCEEEEEEECCC >Mature Secondary Structure MNNKNTFTRDRLSHAIKNALSGVVCSLLFVLPVHAVEFNVDMIDAEDRENIDISRFEKKG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCHHHHHCCC YITPGKYLVRVQINKNILPKALILEWVKADNESGSLLCLTRENLINFGLHTDFIESLQST CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHCCCCCHHHHHHHHHH AGSECLDLSQRQELSVRLDKSTMILSLSIPQAWLKYQATNWTPPEFWDDGITGFILDYNV CCCHHHCCCCCCCEEEEECCCEEEEEEECCHHHHEEECCCCCCCCHHCCCCEEEEEEEEE YASQYDPHHGDSTQNISSYGTLGFNLGAWRLRSDYQYNQNFADGRSVNHDSEFARNYLFR EECCCCCCCCCCCCCCHHCCCEEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCC PIPSWSSKFTMGQYDLSSNLYDTFHFTGASLESDESMLPPDLQGYAPQITGIAQTNAKVT CCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE VAQNGRVLYQTTVAPGPFNISDLGQSFQGQLDVTVEEEDGRTNTFQVGSASIPYLTRKGQ EEECCEEEEEEECCCCCCCHHHHCCCCCCEEEEEEECCCCCCCEEEECCCCCCEEECCCC VRYKTSLGKPTSVGHNDINNPFFWTAEASWGWLNNVSLYGGGMFTADDYQAITTGIGFNL EEEEECCCCCCCCCCCCCCCCEEEEEECCCCEECCEEEECCEEEECCCCEEEEECCCCCC NQFGSLSFDVTGADASLQRQNRDNLRGYSYRFNYAKHFESTGSQITFAGYRFSDKDYVSM CCCCCEEEEEECCCHHHHHCCCCCCCCEEEEECHHHHHHCCCCEEEEEEEEECCCHHHHH GEYLSSRNGDDSIDNEKENYVISLNQYFETLEMNSYLNVTRNTYWDSPSNTNYSISVSKN HHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCEEEEECCEECCCCCCCCEEEEEECC FDIGDFKGISASLAVSRIRWDDDEENQYYFSFSLPLQQSRNISYSMQRTDGSNTSQMISW CCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCHHHCCCCEEEEEECCCCCHHHEEEE YDSSDRNNVWNISASATDDNIRDGEPTLRGSYQHYSPWGRLNINGSVQPNQYNSVTAGWY ECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCC GSLTATRHGVALHDYSYGDNARMMVDTAGISGVEINSNRTVTNGLGIAVVPSLSNYTTSM CCEEECCCCEEEEECCCCCCCEEEEEECCCCEEEECCCCEEECCCCEEEECCCCCCEEEE LRVNNNDLPEGVDVENSVIRTTLTQGAIGYAKLNATTGYQIVGVIRQENGRFPPLGVNVT EEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCEEC DKATGKDVGLVAEDGFVYLSGIQENSTLRLTWGDNSCEITPPNQSNISESAIILPCKTVN CCCCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCCEECCCCCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]