Click here to switch to the map view.

The map label for this gene is ygiK [H]

Identifier: 218550270

GI number: 218550270

Start: 3029694

End: 3031040

Strand: Direct

Name: ygiK [H]

Synonym: EFER_2962

Alternate gene names: 218550270

Gene position: 3029694-3031040 (Clockwise)

Preceding gene: 218550269

Following gene: 218550275

Centisome position: 66.02

GC content: 44.84

Gene sequence:

>1347_bases
TTGACAACTATCGCAAACGGAATTCTCATTAACGAGGGAAGTATGGACTTTGAATATTTCTACCCCGTCTTAATTTTATT
TGGCAGTTTTGCCGTCATGCTGGCAATAGGTGTGCCCATTACTTTTGCTATTGGCCTTTCTTCACTGTTATCAATTATTA
CTGCATTACCACCCGATGCCGCCATTTCTGTGATTTCGCAAAAGATGACAGTGGGACTGGACGGCTTTACGCTATTAGCC
ATTCCCTTCTTCGTATTAGCCGGAAACATTATGAATACCGGTGGCATCGCCCGACGACTGGTTAACCTGGCACAAGCATT
AGTTGGGCGTCTTCCTGGCTCACTGGCTCATTGTAATATCCTCGCGAATACATTGTTTGGTGCGATTTCAGGTTCAGCCG
TTGCGTCAGCCGCAGCGGTAGGTGGGATTATGTCACCTCTGCAGGAAAAAGAGGGCTATGATCCGGCGTTCTCTACGGCG
GTTAATATTGCCTCTGCACCTATTGGCCTGATGATCCCACCGAGCAATGTGTTGATTGTCTATTCCCTCGCCAGTGGAGG
TACTTCTGTTGCAGCATTGTTCTTAGCCGGATATCTGCCAGGCATTCTCACCGCTGCTGCTTTAATGTTTGTGGCTGCAC
TTTATGCACGACGGAACCATTATCCAGTAGCCGAACGCATCAATTTTCGTCAGTTTTTATACGTATTCCGCGAATCAATT
CCCAGCCTGATGCTTATTTTTATCATTATTGGCGGTATTATCGCAGGGGTATTTACGCCCACAGAAGCATCGGCAATTGC
GGTAATTTATAGTTTAGTCCTGGCAATGATATACCGTGAAATCACCATCAAGAAACTCAATGACATCCTGTTAGACTCCG
TAGTAACCAGTTCAATTGTTTTGTTGCTGGTAGGCTGTTCAATGGGGATGTCATGGGCCATGACGAATGCTGATGTTCCT
GAGTTGATCAACGAACTGATTACCAACGTTTCGGATAACAAATGGGTCATTCTTCTTATTATTAATATCACTCTGTTGAT
CGTCGGTACCTTTATGGATATCACACCGGCGATCCTAATATTTACGCCTATTTTCCTGCCGATCGCCCAGCATCTGGGGA
TCGATCCCATTCACTTCGGCATTATTATGGTTTTCAACTTAACTATTGGCCTTTGTACACCACCTGTTGGCACCATTCTG
TTTGTGGGTTGCAGCATTGGTAAGGTCAGTATCGACAGGGCAATTAAACCATTAATGCCGATGTTTCTGGCGTTATTTGT
GGTAATGGCAATGATTTGTTATTTCCCACAACTTAGTCTGATGCTGCCAGGATTATTTTCGAACTGA

Upstream 100 bases:

>100_bases
GGACAAATCTCTCCAGTATTAAAATGGCCGATGGACAAAGTTTATTGGGTTATGCCTGTCAGTGGACTGATTCTGGTCTG
GTATTCAGTAATGAATATTA

Downstream 100 bases:

>100_bases
CAGCAATGTTGAGTGTTTAAAGTGGGCCGGGTATATTGCCTGGCCTACCTTGATTATTGTGTTGCTCAGGCTCTATGACT
CAATGGCCATTACATGCAGC

Product: c4-dicarboxylate permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MTTIANGILINEGSMDFEYFYPVLILFGSFAVMLAIGVPITFAIGLSSLLSIITALPPDAAISVISQKMTVGLDGFTLLA
IPFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLAHCNILANTLFGAISGSAVASAAAVGGIMSPLQEKEGYDPAFSTA
VNIASAPIGLMIPPSNVLIVYSLASGGTSVAALFLAGYLPGILTAAALMFVAALYARRNHYPVAERINFRQFLYVFRESI
PSLMLIFIIIGGIIAGVFTPTEASAIAVIYSLVLAMIYREITIKKLNDILLDSVVTSSIVLLLVGCSMGMSWAMTNADVP
ELINELITNVSDNKWVILLIINITLLIVGTFMDITPAILIFTPIFLPIAQHLGIDPIHFGIIMVFNLTIGLCTPPVGTIL
FVGCSIGKVSIDRAIKPLMPMFLALFVVMAMICYFPQLSLMLPGLFSN

Sequences:

>Translated_448_residues
MTTIANGILINEGSMDFEYFYPVLILFGSFAVMLAIGVPITFAIGLSSLLSIITALPPDAAISVISQKMTVGLDGFTLLA
IPFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLAHCNILANTLFGAISGSAVASAAAVGGIMSPLQEKEGYDPAFSTA
VNIASAPIGLMIPPSNVLIVYSLASGGTSVAALFLAGYLPGILTAAALMFVAALYARRNHYPVAERINFRQFLYVFRESI
PSLMLIFIIIGGIIAGVFTPTEASAIAVIYSLVLAMIYREITIKKLNDILLDSVVTSSIVLLLVGCSMGMSWAMTNADVP
ELINELITNVSDNKWVILLIINITLLIVGTFMDITPAILIFTPIFLPIAQHLGIDPIHFGIIMVFNLTIGLCTPPVGTIL
FVGCSIGKVSIDRAIKPLMPMFLALFVVMAMICYFPQLSLMLPGLFSN
>Mature_447_residues
TTIANGILINEGSMDFEYFYPVLILFGSFAVMLAIGVPITFAIGLSSLLSIITALPPDAAISVISQKMTVGLDGFTLLAI
PFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLAHCNILANTLFGAISGSAVASAAAVGGIMSPLQEKEGYDPAFSTAV
NIASAPIGLMIPPSNVLIVYSLASGGTSVAALFLAGYLPGILTAAALMFVAALYARRNHYPVAERINFRQFLYVFRESIP
SLMLIFIIIGGIIAGVFTPTEASAIAVIYSLVLAMIYREITIKKLNDILLDSVVTSSIVLLLVGCSMGMSWAMTNADVPE
LINELITNVSDNKWVILLIINITLLIVGTFMDITPAILIFTPIFLPIAQHLGIDPIHFGIIMVFNLTIGLCTPPVGTILF
VGCSIGKVSIDRAIKPLMPMFLALFVVMAMICYFPQLSLMLPGLFSN

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=419, Percent_Identity=36.9928400954654, Blast_Score=244, Evalue=1e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 47600; Mature: 47469

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIANGILINEGSMDFEYFYPVLILFGSFAVMLAIGVPITFAIGLSSLLSIITALPPDA
CCEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH
AISVISQKMTVGLDGFTLLAIPFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLAHCNI
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
LANTLFGAISGSAVASAAAVGGIMSPLQEKEGYDPAFSTAVNIASAPIGLMIPPSNVLIV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCEEEE
YSLASGGTSVAALFLAGYLPGILTAAALMFVAALYARRNHYPVAERINFRQFLYVFRESI
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHH
PSLMLIFIIIGGIIAGVFTPTEASAIAVIYSLVLAMIYREITIKKLNDILLDSVVTSSIV
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLVGCSMGMSWAMTNADVPELINELITNVSDNKWVILLIINITLLIVGTFMDITPAILI
HHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
FTPIFLPIAQHLGIDPIHFGIIMVFNLTIGLCTPPVGTILFVGCSIGKVSIDRAIKPLMP
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
MFLALFVVMAMICYFPQLSLMLPGLFSN
HHHHHHHHHHHHHHCCHHHHHCCCCCCC
>Mature Secondary Structure 
TTIANGILINEGSMDFEYFYPVLILFGSFAVMLAIGVPITFAIGLSSLLSIITALPPDA
CEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH
AISVISQKMTVGLDGFTLLAIPFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLAHCNI
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
LANTLFGAISGSAVASAAAVGGIMSPLQEKEGYDPAFSTAVNIASAPIGLMIPPSNVLIV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCEEEE
YSLASGGTSVAALFLAGYLPGILTAAALMFVAALYARRNHYPVAERINFRQFLYVFRESI
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHH
PSLMLIFIIIGGIIAGVFTPTEASAIAVIYSLVLAMIYREITIKKLNDILLDSVVTSSIV
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLVGCSMGMSWAMTNADVPELINELITNVSDNKWVILLIINITLLIVGTFMDITPAILI
HHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
FTPIFLPIAQHLGIDPIHFGIIMVFNLTIGLCTPPVGTILFVGCSIGKVSIDRAIKPLMP
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
MFLALFVVMAMICYFPQLSLMLPGLFSN
HHHHHHHHHHHHHHCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]