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The map label for this gene is ybgH [H]

Identifier: 218549731

GI number: 218549731

Start: 2467810

End: 2469291

Strand: Direct

Name: ybgH [H]

Synonym: EFER_2408

Alternate gene names: 218549731

Gene position: 2467810-2469291 (Clockwise)

Preceding gene: 218549723

Following gene: 218549735

Centisome position: 53.78

GC content: 51.82

Gene sequence:

>1482_bases
ATGAATAAACAAGCATCACAGCCACGGGCGATTTACTACGTCGTCGCGTTGCAAATTTGGGAATATTTTAGCTTCTATGG
CATGCGCGCTCTGCTCATTCTTTATCTTACTAACCAGTTGAAATATGACGACAATCACGCCTACGCGTTGTTCAGTGCTT
ACTGCTCGCTGGTGTATGTTACGCCGATTCTGGGTGGCTACCTGGCTGATAAAGTGCTTGGTAACCGAATGGCGGTAATG
CTGGGCGCTTTGCTGATGGCCATCGGTCATGTCGTGCTGGGGGCAAGCGAAATCCACCCCACATTCCTTTATCTTTCGCT
GGCGATTATCGTCTGCGGCTATGGCCTGTTTAAATCTAACGTAAGCTGTCTGCTTGGCGAGCTGTATGAGCCAACCGATC
CACGTCGTGATGGCGGTTTCTCGCTGATGTATGCGGCAGGCAACGTGGGATCTATTATCGCGCCCATCGCCTGTGGTTAT
GCCCAGGAAGAGTACAGTTGGGCGATGGGCTTTGGTCTGGCGGCGGTTGGCATGATCGCGGGTCTGGTTATCTTCTTATG
TGGCAATCGTCATTTTGCTCATACCCGTGGCGTTAACAAAACGGTGCTGTGCGCCAGAAACTTTCTGCTGCCGAACTGGG
GATGGCTGCTGGTTCTGCTGGTGGCAACGCCTGCGCTGATTACCGTGTTGTTCTGGAAAGAGTGGTCGGTATACGCCTTG
ATTGTCGCGACTATCATTGGCCTTGGCGTTCTGGCAAAAATTTATCGCAAAGCAGAAAACCAGAAACAGCGTAAAGAGCT
GGGACTGATTGTGACGCTCACCTTCTTCAGTATGTTGTTCTGGGCCTTCGCACAACAGGGCGGTAGCTCGATTAGCCTTT
ATATCGACCGCTTCGTTAACCGCGATATGTTTGGTTATACCGTTCCGACCGCTATGTTCCAGTCGATTAATGCCTTCGCG
GTCATGCTGTGCGGTGTGTTCCTGGCATGGGTGGTCAAAGAGAGCGTCGCGGGTAATCGTACCGTGCGCATCTGGGGAAA
ATTTGCTCTTGGTCTTGGCCTGATGAGCGCCGGATTCTGCATTCTGACCTTAAGCGCCCGCTGGTCTGCAATGTATGGTC
ACTCTTCTCTGCCACTGATGGTGTTAGGTCTGGCGGTGATGGGCTTTGCCGAACTGTTTATCGACCCGGTTGCCATGTCG
CAAATTACGCGCATTGAAATTCCGGGCGTGACCGGCGTATTAACCGGCATTTACATGCTGCTTTCTGGCGCGATTGCGAA
CTATCTGGCTGGCGTGATTGCCGATCAGACATCGCAATCTTCGTTTGATGCCTCCGGGGCGATCAACTACTCCATCAATG
CATATATTGAAGTGTTTGATCAAATCACCTGGGGTGCACTGGCGTGTGTAGGACTGGTACTGATGATTTGGCTGTATCAG
GCGCTTAAGTTCAGAAACCGCACGCTGGCGCTGGAGTCTTAA

Upstream 100 bases:

>100_bases
TGCACAAACAATCAAATCTGTATCAAAGCGATAACTTTAAGGAAACACACGCACGCAGCATATTATGCTGGCTGTGTGGC
ATTCACTCCCAGGACATAAC

Downstream 100 bases:

>100_bases
CAGGCCAGCACCGATGCCTGATAAGACGCTCGCTGCGTTTTATCAGGCTCCTTTCTTCGCTTCTTCATACGCTGCCAGCG
TTCGCAGCCTTGCCTCTTTG

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MNKQASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYALFSAYCSLVYVTPILGGYLADKVLGNRMAVM
LGALLMAIGHVVLGASEIHPTFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY
AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFAHTRGVNKTVLCARNFLLPNWGWLLVLLVATPALITVLFWKEWSVYAL
IVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFA
VMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMS
QITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQSSFDASGAINYSINAYIEVFDQITWGALACVGLVLMIWLYQ
ALKFRNRTLALES

Sequences:

>Translated_493_residues
MNKQASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYALFSAYCSLVYVTPILGGYLADKVLGNRMAVM
LGALLMAIGHVVLGASEIHPTFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY
AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFAHTRGVNKTVLCARNFLLPNWGWLLVLLVATPALITVLFWKEWSVYAL
IVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFA
VMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMS
QITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQSSFDASGAINYSINAYIEVFDQITWGALACVGLVLMIWLYQ
ALKFRNRTLALES
>Mature_493_residues
MNKQASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYALFSAYCSLVYVTPILGGYLADKVLGNRMAVM
LGALLMAIGHVVLGASEIHPTFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY
AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFAHTRGVNKTVLCARNFLLPNWGWLLVLLVATPALITVLFWKEWSVYAL
IVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFA
VMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMS
QITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQSSFDASGAINYSINAYIEVFDQITWGALACVGLVLMIWLYQ
ALKFRNRTLALES

Specific function: Probable proton-dependent permease that transports dipeptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpD subfamily [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=208, Percent_Identity=33.6538461538462, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI226371746, Length=201, Percent_Identity=31.3432835820896, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI226371748, Length=190, Percent_Identity=30, Blast_Score=77, Evalue=5e-14,
Organism=Escherichia coli, GI1786927, Length=493, Percent_Identity=97.3630831643002, Blast_Score=973, Evalue=0.0,
Organism=Escherichia coli, GI1790572, Length=474, Percent_Identity=58.0168776371308, Blast_Score=537, Evalue=1e-154,
Organism=Escherichia coli, GI1787922, Length=482, Percent_Identity=28.2157676348548, Blast_Score=185, Evalue=7e-48,
Organism=Escherichia coli, GI1789911, Length=481, Percent_Identity=27.2349272349272, Blast_Score=179, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI17569141, Length=196, Percent_Identity=32.6530612244898, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71987453, Length=191, Percent_Identity=27.7486910994764, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17541704, Length=336, Percent_Identity=25.297619047619, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24639581, Length=201, Percent_Identity=32.3383084577114, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24639583, Length=201, Percent_Identity=32.3383084577114, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24639585, Length=201, Percent_Identity=32.3383084577114, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571098, Length=340, Percent_Identity=25, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI28571102, Length=203, Percent_Identity=30.0492610837438, Blast_Score=89, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571100, Length=203, Percent_Identity=30.0492610837438, Blast_Score=89, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 54114; Mature: 54114

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50850 MFS ; PS01022 PTR2_1 ; PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCEEECCC
>Mature Secondary Structure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HHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]