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The map label for this gene is ybgF [H]

Identifier: 218549685

GI number: 218549685

Start: 2417459

End: 2418250

Strand: Reverse

Name: ybgF [H]

Synonym: EFER_2362

Alternate gene names: 218549685

Gene position: 2418250-2417459 (Counterclockwise)

Preceding gene: 218549686

Following gene: 218549684

Centisome position: 52.7

GC content: 46.46

Gene sequence:

>792_bases
ATGAGCAGTAACTTCAGACATCACTTGTTGAGTCTGTCGTTACTGGTTGGCATAGCGGCCCCCTGGGCCGCTTTTGCTCA
GGCGCCAATCAGTAGTGTCGGCTCAGGCTCGGTCGAAGACCGTGTCACTCAACTTGAGCGTATTTCTAATGCTCATAGCC
AGCTTTTAACTCAACTTCAACAACAAATCTCTGATAACCAGTCCGATATTGATTCTTTGCGTGGTCAAATCCAGGAAAGT
CAGTATCAGCTAAACCAGGCTATTGAACGTCAAAAGCAGATCATGCTGCAGATGGATAGTTTGAGTAGTGGTGGAACTGC
GGCACAATCTGCCAGTGGAGATCAGAGCGGAGCGGCAACAGGAGCATCAACTGCACCTGAAACCGGAGCTGCGGCGTCAG
GCACACCAGTACAAAGTGGTGACGCTAATACCGATTACAATGCGGCAATAGCGCTGGTACAGGATAAATCTCGCCAGGAT
GATGCAATTGTGGCGTTTCAAAACTTCATCAAGAAATACCCGGATTCCACTTACCTGCCAAATGCGAATTATTGGCTCGG
TCAGTTGAATTACAATAAGGGTAAGAAAGATGATGCGGCTTACTATTTTGCTTCAGTAGTGAAAAACTATCCGAAGTCAC
CAAAAGCTGCAGATGCGATGTTTAAAGTCGGCGTTATCATGCAGGACAAAGGTGACACCGCAAAAGCGAAAGCTGTTTAC
CAACAGGTTATCAATAAATATCCTGGTAGTGATGGTGCTAAACAAGCACAAAAACGCTTGAACGCGATGTAA

Upstream 100 bases:

>100_bases
CATCGTTTCTTACGGTAAAGAAAAACCTGCAGTATTGGGTCATGACGAAGCGGCATACTCCAAAAACCGTCGTGCCGTAC
TGGTTTACTAAGAGAATTGC

Downstream 100 bases:

>100_bases
TGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCTTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAA
TTTTTGTTGCGCTCAAATCT

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQISDNQSDIDSLRGQIQES
QYQLNQAIERQKQIMLQMDSLSSGGTAAQSASGDQSGAATGASTAPETGAAASGTPVQSGDANTDYNAAIALVQDKSRQD
DAIVAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVY
QQVINKYPGSDGAKQAQKRLNAM

Sequences:

>Translated_263_residues
MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQISDNQSDIDSLRGQIQES
QYQLNQAIERQKQIMLQMDSLSSGGTAAQSASGDQSGAATGASTAPETGAAASGTPVQSGDANTDYNAAIALVQDKSRQD
DAIVAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVY
QQVINKYPGSDGAKQAQKRLNAM
>Mature_262_residues
SSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQISDNQSDIDSLRGQIQESQ
YQLNQAIERQKQIMLQMDSLSSGGTAAQSASGDQSGAATGASTAPETGAAASGTPVQSGDANTDYNAAIALVQDKSRQDD
AIVAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQ
QVINKYPGSDGAKQAQKRLNAM

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=263, Percent_Identity=89.3536121673004, Blast_Score=436, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28219; Mature: 28087

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QQISDNQSDIDSLRGQIQESQYQLNQAIERQKQIMLQMDSLSSGGTAAQSASGDQSGAAT
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
GASTAPETGAAASGTPVQSGDANTDYNAAIALVQDKSRQDDAIVAFQNFIKKYPDSTYLP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC
NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVY
CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCCCHHHHHHHH
QQVINKYPGSDGAKQAQKRLNAM
HHHHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QQISDNQSDIDSLRGQIQESQYQLNQAIERQKQIMLQMDSLSSGGTAAQSASGDQSGAAT
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
GASTAPETGAAASGTPVQSGDANTDYNAAIALVQDKSRQDDAIVAFQNFIKKYPDSTYLP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC
NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVY
CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCCCHHHHHHHH
QQVINKYPGSDGAKQAQKRLNAM
HHHHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]