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The map label for this gene is yddW [H]

Identifier: 218548931

GI number: 218548931

Start: 1616827

End: 1618251

Strand: Direct

Name: yddW [H]

Synonym: EFER_1578

Alternate gene names: 218548931

Gene position: 1616827-1618251 (Clockwise)

Preceding gene: 218548930

Following gene: 218548932

Centisome position: 35.23

GC content: 50.81

Gene sequence:

>1425_bases
GTGATGAATTTGATCACTCCCGTCTTTTTTGTAACCGTTGGTTGTATTGACTTACCCTGGATAAGTACGAGAATGAGCGG
CACATATGTTTACCGGAAATCAGGCATGGATATCTGCTCCCGAAACGTTACCCTTGTCGCCAGGCGCTCATGTTCTTTGA
TTGCTCTGGCGGTTCTTCTTTGCAGTTGTAAGAGCACGCCACCGACATCTCTGGTGACGCCTGTGCAAAAAACACAACCA
CCAGCCAGCACACAACTCTCGCAGCAGCCAATGCGCGGTATCTGGCTGGCAACTGTTTCCCGACTCGACTGGCCGCCGAT
TAGCTCGGTAAATATCAGTAACCCCACCAGCCGAATGCACGTACAGCAGCAAGCATTGACCAACAAACTGGATCAACTTC
AACGTCTTGGGATCAACACGGTATTCTTCCAGGTTAAACCTGATGCAACTGCCCTGTGGCCCTCGCAAATACTGCCCTGG
TCAGATGTGATGACCGGGAAAATTGGTCAGGACCCAGGCTACGATCCCCTGCAATTTATGCTCGATGAAGCCCATAAGCG
CGGAATGAAAGTCCACGCCTGGTTTAACCCCTATCGCGTATCTGTGAATATCAAACCAGGTACAATCCGGGAACTCAATA
ATACGCTGAACCAGCAACCGGCCAGCGTTTATGTGCAGCATCGCGACTGGATAAAAACATCCGGCGACCGTCTGGTGTTA
GATCCCGGCATTCCCGAAGTTCAGCAATGGATAACCAACATCGTGGCTGAAGTGGTGTCCCGTTATCCGGTAGATGGCGT
ACAGTTTGATGACTATTTTTATACTGAATCTGCCGGTTCAAAGCTGAACGACAATGATACCTTTCGCAGATATGGCGCTG
GTTTTGCTTCAAAGGCAGACTGGCGGCGGCATAATACTCAGCAATTGATCACCCAGGTTTCACGCACCATTAAAAAACTT
AACCCCAATGTCGAATTTGGTGTCAGCCCGGCGGGTGTCTGGCGCAACCGTTCGCATGATCCGATGGGCTCCGATACGCG
CGGAGCCGCAGCTTATGATGAGTCATATGCCGACACTCGCCGTTGGGTACAACTCGGTCTGTTGGATTACATCGCCCCAC
AAATTTACTGGCCCTTCTCACGCAGTGCTGCCCGCTATGATGTGCTGGCAAAATGGTGGGCCGATGTAGTGAAACCAACT
AATACCCGGCTTTACATCGGAGTGGCATTTTATAAGGTGGGCGAACCATCAAAAGTAGAACCTGACTGGATGGTTAACGG
CGGCGTTCCTGAACTGAAAAAACAGCTCGACCTTAACGATACCGTACCGGAAATCAGTGGCACGATTCTGTTTCGTGAAG
ACTATCTCAACAAGCCGCAAACGCAGCAGGCAGTGAACTATCTGCGCAGTCGCTGGGGCAGCTAA

Upstream 100 bases:

>100_bases
TTTCTTCCTGCACCCACGTGCCCGTTCCCCGCACTATGTGGTGATCGATAACAAAAAACACTAACCCTGTTTAAGTGTCG
TAACACAACCCAGAACGGGA

Downstream 100 bases:

>100_bases
TCCCACCTTCACCGCCCGGGTTTCCCTTGCCTGGGCGGTCTTCATCTCAGGATGACAGGATAGACTATACTCTGTATAAA
TAATCTGACTCATCAGTAAT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MMNLITPVFFVTVGCIDLPWISTRMSGTYVYRKSGMDICSRNVTLVARRSCSLIALAVLLCSCKSTPPTSLVTPVQKTQP
PASTQLSQQPMRGIWLATVSRLDWPPISSVNISNPTSRMHVQQQALTNKLDQLQRLGINTVFFQVKPDATALWPSQILPW
SDVMTGKIGQDPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNIKPGTIRELNNTLNQQPASVYVQHRDWIKTSGDRLVL
DPGIPEVQQWITNIVAEVVSRYPVDGVQFDDYFYTESAGSKLNDNDTFRRYGAGFASKADWRRHNTQQLITQVSRTIKKL
NPNVEFGVSPAGVWRNRSHDPMGSDTRGAAAYDESYADTRRWVQLGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPT
NTRLYIGVAFYKVGEPSKVEPDWMVNGGVPELKKQLDLNDTVPEISGTILFREDYLNKPQTQQAVNYLRSRWGS

Sequences:

>Translated_474_residues
MMNLITPVFFVTVGCIDLPWISTRMSGTYVYRKSGMDICSRNVTLVARRSCSLIALAVLLCSCKSTPPTSLVTPVQKTQP
PASTQLSQQPMRGIWLATVSRLDWPPISSVNISNPTSRMHVQQQALTNKLDQLQRLGINTVFFQVKPDATALWPSQILPW
SDVMTGKIGQDPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNIKPGTIRELNNTLNQQPASVYVQHRDWIKTSGDRLVL
DPGIPEVQQWITNIVAEVVSRYPVDGVQFDDYFYTESAGSKLNDNDTFRRYGAGFASKADWRRHNTQQLITQVSRTIKKL
NPNVEFGVSPAGVWRNRSHDPMGSDTRGAAAYDESYADTRRWVQLGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPT
NTRLYIGVAFYKVGEPSKVEPDWMVNGGVPELKKQLDLNDTVPEISGTILFREDYLNKPQTQQAVNYLRSRWGS
>Mature_474_residues
MMNLITPVFFVTVGCIDLPWISTRMSGTYVYRKSGMDICSRNVTLVARRSCSLIALAVLLCSCKSTPPTSLVTPVQKTQP
PASTQLSQQPMRGIWLATVSRLDWPPISSVNISNPTSRMHVQQQALTNKLDQLQRLGINTVFFQVKPDATALWPSQILPW
SDVMTGKIGQDPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNIKPGTIRELNNTLNQQPASVYVQHRDWIKTSGDRLVL
DPGIPEVQQWITNIVAEVVSRYPVDGVQFDDYFYTESAGSKLNDNDTFRRYGAGFASKADWRRHNTQQLITQVSRTIKKL
NPNVEFGVSPAGVWRNRSHDPMGSDTRGAAAYDESYADTRRWVQLGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPT
NTRLYIGVAFYKVGEPSKVEPDWMVNGGVPELKKQLDLNDTVPEISGTILFREDYLNKPQTQQAVNYLRSRWGS

Specific function: Unknown

COG id: COG1649

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0748 family [H]

Homologues:

Organism=Escherichia coli, GI1787767, Length=439, Percent_Identity=85.6492027334852, Blast_Score=783, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003790
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02638 DUF187 [H]

EC number: NA

Molecular weight: Translated: 53710; Mature: 53710

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNLITPVFFVTVGCIDLPWISTRMSGTYVYRKSGMDICSRNVTLVARRSCSLIALAVLL
CCCHHHHHHHHHHHHHCCCCHHHCCCCEEEEECCCCHHHHCCEEEEEECCHHHHHHHHHH
CSCKSTPPTSLVTPVQKTQPPASTQLSQQPMRGIWLATVSRLDWPPISSVNISNPTSRMH
HHCCCCCCCHHCCCCHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
VQQQALTNKLDQLQRLGINTVFFQVKPDATALWPSQILPWSDVMTGKIGQDPGYDPLQFM
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECHHHCCCHHHHCCCCCCCCCCCCHHHHH
LDEAHKRGMKVHAWFNPYRVSVNIKPGTIRELNNTLNQQPASVYVQHRDWIKTSGDRLVL
HHHHHHCCCEEEEEECEEEEEEEECCCHHHHHHHHHCCCCCEEEEEEHHHHHCCCCEEEE
DPGIPEVQQWITNIVAEVVSRYPVDGVQFDDYFYTESAGSKLNDNDTFRRYGAGFASKAD
CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCCCCCCCHHHHHHCCCCCCCCH
WRRHNTQQLITQVSRTIKKLNPNVEFGVSPAGVWRNRSHDPMGSDTRGAAAYDESYADTR
HHHCCHHHHHHHHHHHHHHCCCCCEECCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
RWVQLGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTNTRLYIGVAFYKVGEPSKVE
HHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCC
PDWMVNGGVPELKKQLDLNDTVPEISGTILFREDYLNKPQTQQAVNYLRSRWGS
CCEEECCCCHHHHHHCCCCCCCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MMNLITPVFFVTVGCIDLPWISTRMSGTYVYRKSGMDICSRNVTLVARRSCSLIALAVLL
CCCHHHHHHHHHHHHHCCCCHHHCCCCEEEEECCCCHHHHCCEEEEEECCHHHHHHHHHH
CSCKSTPPTSLVTPVQKTQPPASTQLSQQPMRGIWLATVSRLDWPPISSVNISNPTSRMH
HHCCCCCCCHHCCCCHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
VQQQALTNKLDQLQRLGINTVFFQVKPDATALWPSQILPWSDVMTGKIGQDPGYDPLQFM
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECHHHCCCHHHHCCCCCCCCCCCCHHHHH
LDEAHKRGMKVHAWFNPYRVSVNIKPGTIRELNNTLNQQPASVYVQHRDWIKTSGDRLVL
HHHHHHCCCEEEEEECEEEEEEEECCCHHHHHHHHHCCCCCEEEEEEHHHHHCCCCEEEE
DPGIPEVQQWITNIVAEVVSRYPVDGVQFDDYFYTESAGSKLNDNDTFRRYGAGFASKAD
CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCCCCCCCHHHHHHCCCCCCCCH
WRRHNTQQLITQVSRTIKKLNPNVEFGVSPAGVWRNRSHDPMGSDTRGAAAYDESYADTR
HHHCCHHHHHHHHHHHHHHCCCCCEECCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
RWVQLGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTNTRLYIGVAFYKVGEPSKVE
HHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCC
PDWMVNGGVPELKKQLDLNDTVPEISGTILFREDYLNKPQTQQAVNYLRSRWGS
CCEEECCCCHHHHHHCCCCCCCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]