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The map label for this gene is ydcU [H]

Identifier: 218548871

GI number: 218548871

Start: 1552241

End: 1553182

Strand: Direct

Name: ydcU [H]

Synonym: EFER_1516

Alternate gene names: 218548871

Gene position: 1552241-1553182 (Clockwise)

Preceding gene: 218548870

Following gene: 218548872

Centisome position: 33.83

GC content: 54.25

Gene sequence:

>942_bases
ATGGCGATGAACGTATTGCAATCACCTTCACGTCCAAATCTGGGTAAGGTGTCAGGATTCTTCTGGCGGAAACCGGGACT
GGGGCTGTTTTTGCTGCTGCTTGGTCCGCTGATGTGGTTTGGTATCATCTATTTCGGCTCGCTGCTGACGCTATTATGGC
AGGGCTTTTATACCTTTGACGATTTCACCATGTCGGTAACGCCAGAACTGACGCTGGCGAATATCCGCGCGCTGTTTAAT
CCGGCGAATTACGACATCATCCTTCGCACGCTAACCATGGCTGTGGCTGTCACTATCGCTAGCGCCATTCTGGCTTTTCC
GATGGCGTGGTATATGGCGCGCTATACCAGCGGGAAAATGAAAGCGTTCTTTTATATTGCGGTGATGCTGCCAATGTGGG
CGAGTTATATCGTAAAAGCCTATGCCTGGACCTTATTGCTGGCAAAAGATGGCGTGGCGCAGTGGTTTTTACAACATCTG
GGGTTGGAGCCGCTACTCACGGCGTTCCTTACGTTACCCGCGGTGGGCGGCAATACGCTGTCAACTTCCGGGCTGGGGCG
CTTTCTGGTGTTTCTCTATATCTGGCTGCCGTTCATGATCCTGCCCGTGCAGGCGGCGCTTGAGCGTTTGCCGCCGTCAT
TGTTGCAGGCGTCGGCTGATCTTGGCGCGCGTCCACGGCAAACCTTTCGCTATGTGGTGCTGCCGCTGGCGATCCCGGGT
ATTGCCGCTGGCTCTATCTTTACCTTTTCACTCACACTGGGCGATTTTATCGTTCCGCAGCTGGTTGGCCCTCCAGGATA
TTTTATCGGCAATATGGTTTATTCCCAGCAGGGGGCGATTGGCAATATGCCGATGGCGGCGGCATTCACCCTGGTGCCGA
TTGTTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGA

Upstream 100 bases:

>100_bases
TATGACAGGCGAAGAACTGCCTGCCACGCTCACGCCCGGACAACAGGTGATGGTTTCCTGGTCGCGCGATGTGATGGTGC
CGCTGGTTGAGGAGAGGTGA

Downstream 100 bases:

>100_bases
ACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTGGTTTTCCTACATTTTCCCATCCTGATTATCGCCGCCT
ATGCGTTTAACACTGAAGAT

Product: spermidine/putrescine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAMNVLQSPSRPNLGKVSGFFWRKPGLGLFLLLLGPLMWFGIIYFGSLLTLLWQGFYTFDDFTMSVTPELTLANIRALFN
PANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHL
GLEPLLTAFLTLPAVGGNTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPG
IAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVLIALYLAFVKRLGAFDAL

Sequences:

>Translated_313_residues
MAMNVLQSPSRPNLGKVSGFFWRKPGLGLFLLLLGPLMWFGIIYFGSLLTLLWQGFYTFDDFTMSVTPELTLANIRALFN
PANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHL
GLEPLLTAFLTLPAVGGNTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPG
IAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVLIALYLAFVKRLGAFDAL
>Mature_312_residues
AMNVLQSPSRPNLGKVSGFFWRKPGLGLFLLLLGPLMWFGIIYFGSLLTLLWQGFYTFDDFTMSVTPELTLANIRALFNP
ANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLG
LEPLLTAFLTLPAVGGNTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGI
AAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVLIALYLAFVKRLGAFDAL

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787713, Length=313, Percent_Identity=98.4025559105431, Blast_Score=605, Evalue=1e-174,
Organism=Escherichia coli, GI1787080, Length=241, Percent_Identity=31.9502074688797, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787369, Length=266, Percent_Identity=29.3233082706767, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787368, Length=116, Percent_Identity=31.8965517241379, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34451; Mature: 34320

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1 ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNVLQSPSRPNLGKVSGFFWRKPGLGLFLLLLGPLMWFGIIYFGSLLTLLWQGFYTFD
CCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKM
CCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAFLTLPAVGGNTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
STSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
IAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVLIALY
CCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
LAFVKRLGAFDAL
HHHHHHHCCCCCC
>Mature Secondary Structure 
AMNVLQSPSRPNLGKVSGFFWRKPGLGLFLLLLGPLMWFGIIYFGSLLTLLWQGFYTFD
CCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKM
CCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAFLTLPAVGGNTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
STSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
IAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVLIALY
CCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
LAFVKRLGAFDAL
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]