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The map label for this gene is rsxC

Identifier: 218548775

GI number: 218548775

Start: 1452798

End: 1454978

Strand: Reverse

Name: rsxC

Synonym: EFER_1414

Alternate gene names: 218548775

Gene position: 1454978-1452798 (Counterclockwise)

Preceding gene: 218548776

Following gene: 218548774

Centisome position: 31.71

GC content: 51.72

Gene sequence:

>2181_bases
ATGCTTAAGTTATTCTCTGCCTTTAAAAAAAATAAGATCTGGGACTTTAATGGTGGCATTCATCCACCAGAAATGAAAAG
CCAGTCTAACGGCACACCGTTGCGCCAGGTTCCGCTGGCGCAACGTTTTGTTATGCCCCTAAAACAACATATAGGTGCTG
AGGGAGAATTGTGCGTGAGTGTGGGTGATCATGTTTTACGTGGTCAGCCTTTAACGCGTGGCCGCGGGAAAATGCTGCCC
ATACATGCTCCGACTTCCGGCACCGTGGTCGCCATTGCCCCCCACTCCACGGCACATCCTTCTGCGCTGGCTGAATTAAG
CGTGATTATTGATGCTGATGGCGAAGATCGCTGGATTGAACGTGATGGCTGGCTGGATTATCGCAATCACAGCCGCGAGG
AGTTAATTGCGCGTATTCATCAATTTGGCGTGGCGGGTCTCGGCGGTGCAGGCTTCCCGACTGGCGTTAAATTGCAAGGC
GGTGGCGATAAAATTGAAACGCTGATTATTAACGCCGCCGAATGTGAGCCATATATCACTGCTGATGATCGTCTGATGCA
GGATTGTGCCGCACAAGTTGTGGAAGGTATCCGCATTCTTGCGCATATCCTCCAGCCTCGTGAAGTGTTGATCGGCATTG
AAGATAATAAACCGCAGGCTATTTCCATGCTGCGTGCAGTTCTTGCTGATTCACATGACATATCGCTGCGGGTAATCCCA
ACCAAGTATCCTTCTGGCGGTGCCAAACAGTTGACATATATTCTGACGGGCAAACAAGTGCCGCATGGCGGTCGTTCCTC
AGATATTGGCGTGTTAATGCAAAACGTCGGTACGGCTTACGCGGTGAAACGCGCCGTCATTGACGGAGAGCCGATCACCG
AACGCGTGGTCACACTTACTGGTGAGGCCGTCAGCCGTCCGGGTAATGTATGGGCACGGCTGGGAACGCCTGTAAAGCAT
CTGCTAACCGATGCCGGATTTTGCCCTTCAGCCGACCAGATGGTAATTATGGGCGGGCCATTAATGGGCTTTACTCTTCC
CTGGCTGGATGTGCCTGTTGTCAAAATTACCAACTGTCTGTTAGCCCCTTCAGCTTCGGAACTCGGCGAACCGCAAGAAG
AACAAGGTTGTATTCGTTGCAGCTCGTGCGCCGACGCCTGTCCGGCAGATTTACTGCCACAACAGTTATATTGGTTTAGC
AAAGGTCAGCAACACGATAAAGCCACTGCGCACAATATTGCCGACTGTATTGAATGTGGTGCCTGCGCCTGGGTTTGTCC
GAGTAATATTCCGCTGGTGCAATATTTTCGTCAGGAAAAGGCAGAGATTGCCGCAATTCGCCAGGAAGAACGACGTGCAG
CTGAAGCCAAAGCACGATTCGAAGCAAGGCAGGCACGTCTGGAGCGTGAAAAAGCTGCGCGTCTTGAACGGCATAAAAAA
GCAGCAGTTCAACCTGCAGAGAAAGATAAAGACGCCATTGCGGCAGCTCTTGCCAGAGTGAAAGAGAAACAAACGCAAGC
GACACAACCGATTATCATTAAAGCGGGTGAACGTCCGGATAACAGCGCTATTATCGCAGCACGAGAAGCACGTAAAGCGC
AGGCCAGAGCAAAGCAGGCGCAAATTCTACAAGCCGATGAATCACCATCAACAGCCGATCCGCGTAAAGCCGCTGTTGAG
GCTGCTATTGCCCGAGCTAAAGCACGTAAGCAGGAACAACAAGCTGTCACTGATACCAGTGCTAACGAAACGGTCGATCC
ACGCAAAGCCGCTGTTGAAGCAGCTATCGCCCGTGCCAAAGCACGTAAACAGCAACAGCAAGCCTCTGCTAATACCAGTG
CTAACGAAACGGTCGATCCACGCAAAGCCGCGGTTGAGGCAGCTATCGCCCGTGCCAAAGCTCGCAAACAAGAACAACAA
GCTGCTGCTAATACCAGTGATAACGAAACGGTTGATCCACGCAAAGCCGCGGTTGAAGCAGCTATCGCCCGTGCCAAAGC
ACGTAAACAGCAACAGCAAGCCGCCGCTAATACAAGTGATAACGAAACGGTTGAACCGCGCAATACCACAGCAGCAAACG
GCGAAGAAGTGGTTGATCCACGTAAAGCTGCAATCGCTGCAGCTATCGCGCGGGCGCAAGCCAAAAAAGCAGCACAGCAA
AAGGTAGTTAACGAGGACTAA

Upstream 100 bases:

>100_bases
CCGACGCAGTGCATCTCTTTACAGCCTGTTGCTGAAACGCCTGACAGTTGGAAGTGGGATCTGAACACGATTCCTGTTCG
CATCATTCCAGTGGAACACC

Downstream 100 bases:

>100_bases
ATGGTATTCAGAATCGCAAGCTCCCCCTATACCCATAACCAACGGCAAACTTCACGGATTATGCTGTTGGTATTGCTGGC
CGCTATTCCTGGTATTGCGA

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 726; Mature: 726

Protein sequence:

>726_residues
MLKLFSAFKKNKIWDFNGGIHPPEMKSQSNGTPLRQVPLAQRFVMPLKQHIGAEGELCVSVGDHVLRGQPLTRGRGKMLP
IHAPTSGTVVAIAPHSTAHPSALAELSVIIDADGEDRWIERDGWLDYRNHSREELIARIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADSHDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAVSRPGNVWARLGTPVKH
LLTDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFS
KGQQHDKATAHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK
AAVQPAEKDKDAIAAALARVKEKQTQATQPIIIKAGERPDNSAIIAAREARKAQARAKQAQILQADESPSTADPRKAAVE
AAIARAKARKQEQQAVTDTSANETVDPRKAAVEAAIARAKARKQQQQASANTSANETVDPRKAAVEAAIARAKARKQEQQ
AAANTSDNETVDPRKAAVEAAIARAKARKQQQQAAANTSDNETVEPRNTTAANGEEVVDPRKAAIAAAIARAQAKKAAQQ
KVVNED

Sequences:

>Translated_726_residues
MLKLFSAFKKNKIWDFNGGIHPPEMKSQSNGTPLRQVPLAQRFVMPLKQHIGAEGELCVSVGDHVLRGQPLTRGRGKMLP
IHAPTSGTVVAIAPHSTAHPSALAELSVIIDADGEDRWIERDGWLDYRNHSREELIARIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADSHDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAVSRPGNVWARLGTPVKH
LLTDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFS
KGQQHDKATAHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK
AAVQPAEKDKDAIAAALARVKEKQTQATQPIIIKAGERPDNSAIIAAREARKAQARAKQAQILQADESPSTADPRKAAVE
AAIARAKARKQEQQAVTDTSANETVDPRKAAVEAAIARAKARKQQQQASANTSANETVDPRKAAVEAAIARAKARKQEQQ
AAANTSDNETVDPRKAAVEAAIARAKARKQQQQAAANTSDNETVEPRNTTAANGEEVVDPRKAAIAAAIARAQAKKAAQQ
KVVNED
>Mature_726_residues
MLKLFSAFKKNKIWDFNGGIHPPEMKSQSNGTPLRQVPLAQRFVMPLKQHIGAEGELCVSVGDHVLRGQPLTRGRGKMLP
IHAPTSGTVVAIAPHSTAHPSALAELSVIIDADGEDRWIERDGWLDYRNHSREELIARIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADSHDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAVSRPGNVWARLGTPVKH
LLTDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFS
KGQQHDKATAHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK
AAVQPAEKDKDAIAAALARVKEKQTQATQPIIIKAGERPDNSAIIAAREARKAQARAKQAQILQADESPSTADPRKAAVE
AAIARAKARKQEQQAVTDTSANETVDPRKAAVEAAIARAKARKQQQQASANTSANETVDPRKAAVEAAIARAKARKQEQQ
AAANTSDNETVDPRKAAVEAAIARAKARKQQQQAAANTSDNETVEPRNTTAANGEEVVDPRKAAIAAAIARAQAKKAAQQ
KVVNED

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787916, Length=687, Percent_Identity=88.7918486171761, Blast_Score=1111, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFC_ESCF3 (B7LQP1)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002382566.1
- EnsemblBacteria:   EBESCT00000122658
- GeneID:   7123818
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_1414
- GeneTree:   EBGT00050000008362
- HOGENOM:   HBG537098
- ProtClustDB:   PRK05035
- BioCyc:   EFER585054:EFER_1414-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00461
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554
- Gene3D:   G3DSA:1.10.1060.10
- TIGRFAMs:   TIGR01945

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB; SSF46548 Helical_ferredxn

EC number: NA

Molecular weight: Translated: 78232; Mature: 78232

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLFSAFKKNKIWDFNGGIHPPEMKSQSNGTPLRQVPLAQRFVMPLKQHIGAEGELCVS
CCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
VGDHVLRGQPLTRGRGKMLPIHAPTSGTVVAIAPHSTAHPSALAELSVIIDADGEDRWIE
CCCHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCCEEC
RDGWLDYRNHSREELIARIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADSHDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHEEC
GEAVSRPGNVWARLGTPVKHLLTDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCCCHHHHHHCCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFSKGQQHDKATAHNIADCIECG
CCCCHHHHCCCCCCCCCEEEHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAEKDKDAIAAALARVKEKQTQATQPIIIKAGERPDNSAIIAAREARKAQARAKQA
HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHH
QILQADESPSTADPRKAAVEAAIARAKARKQEQQAVTDTSANETVDPRKAAVEAAIARAK
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
ARKQQQQASANTSANETVDPRKAAVEAAIARAKARKQEQQAAANTSDNETVDPRKAAVEA
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
AIARAKARKQQQQAAANTSDNETVEPRNTTAANGEEVVDPRKAAIAAAIARAQAKKAAQQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
KVVNED
HCCCCC
>Mature Secondary Structure
MLKLFSAFKKNKIWDFNGGIHPPEMKSQSNGTPLRQVPLAQRFVMPLKQHIGAEGELCVS
CCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
VGDHVLRGQPLTRGRGKMLPIHAPTSGTVVAIAPHSTAHPSALAELSVIIDADGEDRWIE
CCCHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCCEEC
RDGWLDYRNHSREELIARIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADSHDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHEEC
GEAVSRPGNVWARLGTPVKHLLTDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCCCHHHHHHCCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFSKGQQHDKATAHNIADCIECG
CCCCHHHHCCCCCCCCCEEEHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAEKDKDAIAAALARVKEKQTQATQPIIIKAGERPDNSAIIAAREARKAQARAKQA
HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHH
QILQADESPSTADPRKAAVEAAIARAKARKQEQQAVTDTSANETVDPRKAAVEAAIARAK
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
ARKQQQQASANTSANETVDPRKAAVEAAIARAKARKQEQQAAANTSDNETVDPRKAAVEA
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
AIARAKARKQQQQAAANTSDNETVEPRNTTAANGEEVVDPRKAAIAAAIARAQAKKAAQQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
KVVNED
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA