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The map label for this gene is rnfD

Identifier: 218548774

GI number: 218548774

Start: 1451739

End: 1452797

Strand: Reverse

Name: rnfD

Synonym: EFER_1413

Alternate gene names: 218548774

Gene position: 1452797-1451739 (Counterclockwise)

Preceding gene: 218548775

Following gene: 218548773

Centisome position: 31.66

GC content: 51.46

Gene sequence:

>1059_bases
ATGGTATTCAGAATCGCAAGCTCCCCCTATACCCATAACCAACGGCAAACTTCACGGATTATGCTGTTGGTATTGCTGGC
CGCTATTCCTGGTATTGCGACACAATTGTGGTTCTTTGGCTGGGGCACACTTGTCCAGATCATATTGGCTGTCATTAGCG
CCCTTTCAGCTGAAGCTCTGGTGTTAAAACTGAGAAATCAGCCAATTGCCGCCATTCTGAAAGATAATTCAGCACTACTG
ACCGGTTTGCTGTTAGCTGTAAGTATTCCGCCTCTCGCACCGTGGTGGATGGTAGTTCTCGGTACGGTCTTTGCGGTAAT
TATCGCCAAGCAACTTTACGGCGGTCTGGGGCAGAATCCGTTCAACCCGGCAATGATCGGTTATGTTGTTTTGCTGATCT
CTTTCCCGGTCCAGATGACCAACTGGCTCCCCCCCTATGAAATTGCAGCAACCGTACCGGGCATGGCAGACACGTTACAG
GTGATTTTCACCGGACATACCACCAGCGGTGGTGATATGAGTACACTGCGAATGGGTATTGATGGAATCAGCCAGGCGAC
ACCCTTAGATACGCTGAAAACTTCGTTACATTCTGGTCGCTCCGTTGAACAGATCATGCAGTATCCCATCTTTAGCGGCA
TGTTGGCAGGTGCTGGCTGGCAGTGGGTTAACCTCGCATGGCTGGCTGGCGGTGTATGGTTACTTGCGATTAAAGTTATC
CGCTGGCATATCCCGGTAAGTTTTCTGGTGTCACTGGCGCTGTGCGCGACACTCGGTTGGTTGTTTGCACCTGAATCGCT
CGCGTCGCCACAAATTCATATGCTTTCCGGCGCGACGATGTTGGGGGCATTTTTTATTCTTACCGATCCCGTCACCGCCT
CTACTACCAATCGTGGACGCTTAATTTTCGGCGCTCTGGCGGGTGTGCTCGTCTGGCTTATTCGTAGCTTTGGTGGCTAT
CCCGATGGTGTGGCATTTGCTGTCCTGCTGGCGAATATTACCGTTCCTCTGATCGATTACTACACGCGCCCGCGCGTTTA
CGGACACCGGAAAGGATAA

Upstream 100 bases:

>100_bases
CGAAGAAGTGGTTGATCCACGTAAAGCTGCAATCGCTGCAGCTATCGCGCGGGCGCAAGCCAAAAAAGCAGCACAGCAAA
AGGTAGTTAACGAGGACTAA

Downstream 100 bases:

>100_bases
ATCATGCTGAAAACGATTCGAAAACATGGCATCACTCTGGCCCTGTTTGCTGCCGGGTCAGCAGGATTAACCGCAGCCAT
CAACCAGATGACCAAATCGA

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MVFRIASSPYTHNQRQTSRIMLLVLLAAIPGIATQLWFFGWGTLVQIILAVISALSAEALVLKLRNQPIAAILKDNSALL
TGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTNWLPPYEIAATVPGMADTLQ
VIFTGHTTSGGDMSTLRMGIDGISQATPLDTLKTSLHSGRSVEQIMQYPIFSGMLAGAGWQWVNLAWLAGGVWLLAIKVI
RWHIPVSFLVSLALCATLGWLFAPESLASPQIHMLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGVLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHRKG

Sequences:

>Translated_352_residues
MVFRIASSPYTHNQRQTSRIMLLVLLAAIPGIATQLWFFGWGTLVQIILAVISALSAEALVLKLRNQPIAAILKDNSALL
TGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTNWLPPYEIAATVPGMADTLQ
VIFTGHTTSGGDMSTLRMGIDGISQATPLDTLKTSLHSGRSVEQIMQYPIFSGMLAGAGWQWVNLAWLAGGVWLLAIKVI
RWHIPVSFLVSLALCATLGWLFAPESLASPQIHMLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGVLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
>Mature_352_residues
MVFRIASSPYTHNQRQTSRIMLLVLLAAIPGIATQLWFFGWGTLVQIILAVISALSAEALVLKLRNQPIAAILKDNSALL
TGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTNWLPPYEIAATVPGMADTLQ
VIFTGHTTSGGDMSTLRMGIDGISQATPLDTLKTSLHSGRSVEQIMQYPIFSGMLAGAGWQWVNLAWLAGGVWLLAIKVI
RWHIPVSFLVSLALCATLGWLFAPESLASPQIHMLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGVLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHRKG

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=352, Percent_Identity=88.3522727272727, Blast_Score=630, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_ESCF3 (B7LQP0)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002382565.1
- EnsemblBacteria:   EBESCT00000125377
- GeneID:   7121159
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_1413
- GeneTree:   EBGT00050000010026
- HOGENOM:   HBG454412
- ProtClustDB:   PRK00816
- BioCyc:   EFER585054:EFER_1413-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 38040; Mature: 38040

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x40579ed8)-; HASH(0x28d0dc40)-; HASH(0x27dac8b0)-; HASH(0x290c21cc)-; HASH(0x28bbdec8)-; HASH(0x28fdcab0)-; HASH(0x27d12464)-; HASH(0x29052538)-; HASH(0x28f04374)-; HASH(0x290db4e4)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFRIASSPYTHNQRQTSRIMLLVLLAAIPGIATQLWFFGWGTLVQIILAVISALSAEAL
CEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLKLRNQPIAAILKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNP
HHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMIGYVVLLISFPVQMTNWLPPYEIAATVPGMADTLQVIFTGHTTSGGDMSTLRMGI
CCHHHHHHHHHHHHCCHHHHCCCCCHHHHHCCCCHHHEEEEEEECCCCCCCCHHHHHHCC
DGISQATPLDTLKTSLHSGRSVEQIMQYPIFSGMLAGAGWQWVNLAWLAGGVWLLAIKVI
CCCCCCCCHHHHHHHHHCCCCHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RWHIPVSFLVSLALCATLGWLFAPESLASPQIHMLSGATMLGAFFILTDPVTASTTNRGR
HHHCCHHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCHHHHHHHHHEECCCCCCCCCCCC
LIFGALAGVLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
>Mature Secondary Structure
MVFRIASSPYTHNQRQTSRIMLLVLLAAIPGIATQLWFFGWGTLVQIILAVISALSAEAL
CEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLKLRNQPIAAILKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNP
HHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMIGYVVLLISFPVQMTNWLPPYEIAATVPGMADTLQVIFTGHTTSGGDMSTLRMGI
CCHHHHHHHHHHHHCCHHHHCCCCCHHHHHCCCCHHHEEEEEEECCCCCCCCHHHHHHCC
DGISQATPLDTLKTSLHSGRSVEQIMQYPIFSGMLAGAGWQWVNLAWLAGGVWLLAIKVI
CCCCCCCCHHHHHHHHHCCCCHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RWHIPVSFLVSLALCATLGWLFAPESLASPQIHMLSGATMLGAFFILTDPVTASTTNRGR
HHHCCHHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCHHHHHHHHHEECCCCCCCCCCCC
LIFGALAGVLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA