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The map label for this gene is ydiK [H]

Identifier: 218548727

GI number: 218548727

Start: 1399647

End: 1400759

Strand: Reverse

Name: ydiK [H]

Synonym: EFER_1364

Alternate gene names: 218548727

Gene position: 1400759-1399647 (Counterclockwise)

Preceding gene: 218548737

Following gene: 218548726

Centisome position: 30.53

GC content: 51.66

Gene sequence:

>1113_bases
ATGGTAAATGTTCGTCAGCCCAGGGATGTTGCCCAAATTCTGCTCTCGGTGCTGTTTTTAGCCATCATGATTGTGGCATG
TTTATGGATTGTTCAACCCTTTATTCTCGGTATCACATGGGCCGGTACAGTGGTTATCGCCACCTGGCCTGTTCTGTTAC
GCTTGCAAAAAATCCTCTTTGGCCGCCGTTCTCTCGCTGTACTGGTGATGACGTTACTGTTAGTGATGGTGTTCATCATT
CCTATTGCCTTATTGGTAAATAGTATTGTGGACGGCAGCGGTCCACTGATCAAAGCCATCTCCAGCGGTGACATGACATT
ACCAGACCTCGCCTGGTTAAATACCATTCCGGTGATTGGCGCGAAGTTGTATGCCGGTTGGCACAATTTGCTGGATATGG
GCGGCACAGCGATCATGGCGAAAGTCCGTCCTTACATTGGCACAACGACCACCTGGTTTGTTGGACAAGCTGCGCATCTC
GGACGTTTTATGGTGCATTGTGCGCTGATGCTACTTTTCAGCGCCTTGCTGTACTGGCGCGGTGAACAGGTTGCGCAAGG
TATCCGCCATTTTGCGACACGTCTGGCGGGCGTTCGTGGTGATGCAGCTGTGCTACTCGCCGCACAAGCCATTCGCGCCG
TGGCGCTTGGCGTAGTGGTAACTGCGCTGGTACAGGCAGTACTTGGTGGGATTGGTCTGGCTGTTTCAGGTGTTCCTTAC
GCAACGTTATTGACCGTATTAATGATCCTCTCCTGTCTGGTACAGCTTGGGCCATTACCGGTATTGATCCCGGCGATTAT
CTGGCTCTACTGGACCGGAGATACCACATGGGGAACTGTGTTACTGGTGTGGAGTGGTGTGGTCGGTACACTGGATAACG
TCATCCGACCAATGCTAATTCGTATGGGCGCCGACCTACCGTTAATACTGATCCTCTCTGGTGTCATTGGTGGTTTGATT
GCCTTTGGGATGATCGGTCTGTTTATCGGCCCAGTTCTGTTAGCGGTTACCTGGCGCCTGTTTGCCGCCTGGGTTGATGA
AGTTCCCCCGCCAGTTAACGATCCCGATGAAATCCTCGAAGAGTTGGACGAGATCGAAAAGCCACAACATTAA

Upstream 100 bases:

>100_bases
GCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGTAATGAGTTCTGCGTGTTCACGTCGCGTCAACGTTTTGACGCAC
AAAAAAGGTGAAAAGTGTTT

Downstream 100 bases:

>100_bases
GTCAAAATCACCGGGCAAATAATCTGCCCGGTTTTTCTTTTCATCCCCGCGATATTTTTACTTTCACCACTCAATGATCA
TTAATGTGTCGCAAAATGTT

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILFGRRSLAVLVMTLLLVMVFII
PIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHL
GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY
ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLI
AFGMIGLFIGPVLLAVTWRLFAAWVDEVPPPVNDPDEILEELDEIEKPQH

Sequences:

>Translated_370_residues
MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILFGRRSLAVLVMTLLLVMVFII
PIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHL
GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY
ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLI
AFGMIGLFIGPVLLAVTWRLFAAWVDEVPPPVNDPDEILEELDEIEKPQH
>Mature_370_residues
MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILFGRRSLAVLVMTLLLVMVFII
PIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHL
GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY
ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLI
AFGMIGLFIGPVLLAVTWRLFAAWVDEVPPPVNDPDEILEELDEIEKPQH

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=370, Percent_Identity=96.4864864864865, Blast_Score=669, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39871; Mature: 39871

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
AKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHLGRFMVHCALMLLFSALLYWR
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFAAWVDEVPPPVNDPDEILE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ELDEIEKPQH
HHHHHCCCCC
>Mature Secondary Structure
MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
AKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHLGRFMVHCALMLLFSALLYWR
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFAAWVDEVPPPVNDPDEILE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ELDEIEKPQH
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]