Click here to switch to the map view.

The map label for this gene is flhC [H]

Identifier: 218548501

GI number: 218548501

Start: 1171271

End: 1171849

Strand: Direct

Name: flhC [H]

Synonym: EFER_1130

Alternate gene names: 218548501

Gene position: 1171271-1171849 (Clockwise)

Preceding gene: 218548500

Following gene: 218548502

Centisome position: 25.53

GC content: 52.16

Gene sequence:

>579_bases
ATGAGTGAAAAAAGCATTGTGCAGGAAGCGCGGGATATCCAACTGGCGATGGAACTGATCACCCTTGGCGCACGCCTGCA
GATGCTGGAAAGTGAAACCCAGCTGAGCCGTGGTCGCCTGATCAAACTGTACAAGGAGCTGCGAGGCAGCCCACCGCCAA
AAGGCATGTTGCCGTTCTCTACTGACTGGTTTATGACCTGGGAACAAAACATACATGCGTCCATGTTCTGCAATGCCTGG
CAGTTTTTACTCAAAACCGGTCTGTGTAGTGGTGTTGATGCGGTGATCAAAGCGTATCGCCTTTATCTCGAACAGTGCCC
GCAGGAGGCCGATGGCCCGGTACTGGCCTTAACCCGTGCCTGGACACTGGTTCGCTTTGTTGAGAGTGGACTGCTGGAAC
TTTCCAGTTGCAACTGCTGCGGTGGCAATTTCATAACCCATGCGCACCAGCCGCCAGGCAGTTTTGCTTGTAGTCTTTGC
CAACCACCCTCTCGCGCTGTAAAAAGACGTAAACTTTGCCAGAAAGCTGCCGATATTATTCCACAACTGCTGGATGATCA
GATCGAACAGGCTATGTAA

Upstream 100 bases:

>100_bases
ATGACCTGCAGCAAATCCACACCGGAATTATGCTGTCCACGCGGCTGCTGAATGAGGCAAACCAACAGGATGCCTCCGAG
CGCAAGAGAAGGGGCTGATC

Downstream 100 bases:

>100_bases
CCGAAACGGTATGGTAAAGCCCCCCAGCAGCGGTCACTCTCCACCGCTGCTTTTTTTGCCACTTCACCCGGTTAATCCTT
CGACTGCTCATCCTGTCATG

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAW
QFLLKTGLCSGVDAVIKAYRLYLEQCPQEADGPVLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPPGSFACSLC
QPPSRAVKRRKLCQKAADIIPQLLDDQIEQAM

Sequences:

>Translated_192_residues
MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAW
QFLLKTGLCSGVDAVIKAYRLYLEQCPQEADGPVLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPPGSFACSLC
QPPSRAVKRRKLCQKAADIIPQLLDDQIEQAM
>Mature_191_residues
SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAWQ
FLLKTGLCSGVDAVIKAYRLYLEQCPQEADGPVLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPPGSFACSLCQ
PPSRAVKRRKLCQKAADIIPQLLDDQIEQAM

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=192, Percent_Identity=92.1875, Blast_Score=369, Evalue=1e-104,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 21533; Mature: 21402

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQEADGPVLALTRA
CCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHHHH
WTLVRFVESGLLELSSCNCCGGNFITHAHQPPGSFACSLCQPPSRAVKRRKLCQKAADII
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
PQLLDDQIEQAM
HHHHHHHHHHCC
>Mature Secondary Structure 
SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQEADGPVLALTRA
CCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHHHH
WTLVRFVESGLLELSSCNCCGGNFITHAHQPPGSFACSLCQPPSRAVKRRKLCQKAADII
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
PQLLDDQIEQAM
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]