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The map label for this gene is flhD [H]

Identifier: 218548500

GI number: 218548500

Start: 1170810

End: 1171268

Strand: Direct

Name: flhD [H]

Synonym: EFER_1129

Alternate gene names: 218548500

Gene position: 1170810-1171268 (Clockwise)

Preceding gene: 218548498

Following gene: 218548501

Centisome position: 25.52

GC content: 48.58

Gene sequence:

>459_bases
ATGGGGTGCGGAATTATCCGCATAAAAATATATACCTGGCATAATTCGAGTCGTAGCACAGGCAACTTGAAGTATGCCGG
GTATAGCTGGTTATTCTGGATGAAAATAATGCATACATCCGAGTTGCTGAAACACATCTACGATATCAATTTGTCGTATT
TACTCCTTGCTCAGCGTCTGATTCTTCAGGACAAAGCGTCTGCCATGTTTCGTCTCGGTATCGATGAGGAGATGGCGACT
ACGCTGGAAGCTCTGACCCTTCCGCAAATGGTTAAACTGGCAGAAACGAATCAACTCGTTTGCCATTTCCGCTTTGATAA
CCACCAGACGATTACCCGTCTGACTCAGGACTCCCGCGTCGATGACCTGCAGCAAATCCACACCGGAATTATGCTGTCCA
CGCGGCTGCTGAATGAGGCAAACCAACAGGATGCCTCCGAGCGCAAGAGAAGGGGCTGA

Upstream 100 bases:

>100_bases
ATGTGTAAATGGATGCTACCCCTACGAGCTTCCTGTTACCCATTTATAACGTGATAGCGATTATCTGATTTTTCTTCTTA
CCGGTTTTTCCGGCGACATC

Downstream 100 bases:

>100_bases
TCATGAGTGAAAAAAGCATTGTGCAGGAAGCGCGGGATATCCAACTGGCGATGGAACTGATCACCCTTGGCGCACGCCTG
CAGATGCTGGAAAGTGAAAC

Product: transcriptional activator FlhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MGCGIIRIKIYTWHNSSRSTGNLKYAGYSWLFWMKIMHTSELLKHIYDINLSYLLLAQRLILQDKASAMFRLGIDEEMAT
TLEALTLPQMVKLAETNQLVCHFRFDNHQTITRLTQDSRVDDLQQIHTGIMLSTRLLNEANQQDASERKRRG

Sequences:

>Translated_152_residues
MGCGIIRIKIYTWHNSSRSTGNLKYAGYSWLFWMKIMHTSELLKHIYDINLSYLLLAQRLILQDKASAMFRLGIDEEMAT
TLEALTLPQMVKLAETNQLVCHFRFDNHQTITRLTQDSRVDDLQQIHTGIMLSTRLLNEANQQDASERKRRG
>Mature_151_residues
GCGIIRIKIYTWHNSSRSTGNLKYAGYSWLFWMKIMHTSELLKHIYDINLSYLLLAQRLILQDKASAMFRLGIDEEMATT
LEALTLPQMVKLAETNQLVCHFRFDNHQTITRLTQDSRVDDLQQIHTGIMLSTRLLNEANQQDASERKRRG

Specific function: Transcriptional activator. Involved in the regulation of a number of genetic systems. Together with FlhC it acts as an activator of class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FlhD family [H]

Homologues:

Organism=Escherichia coli, GI145693151, Length=116, Percent_Identity=87.9310344827586, Blast_Score=211, Evalue=1e-56,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007911
- ProDom:   PD015582 [H]

Pfam domain/function: PF05247 FlhD [H]

EC number: NA

Molecular weight: Translated: 17701; Mature: 17570

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCGIIRIKIYTWHNSSRSTGNLKYAGYSWLFWMKIMHTSELLKHIYDINLSYLLLAQRL
CCCEEEEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ILQDKASAMFRLGIDEEMATTLEALTLPQMVKLAETNQLVCHFRFDNHQTITRLTQDSRV
HHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHCCCCH
DDLQQIHTGIMLSTRLLNEANQQDASERKRRG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure 
GCGIIRIKIYTWHNSSRSTGNLKYAGYSWLFWMKIMHTSELLKHIYDINLSYLLLAQRL
CCEEEEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ILQDKASAMFRLGIDEEMATTLEALTLPQMVKLAETNQLVCHFRFDNHQTITRLTQDSRV
HHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHCCCCH
DDLQQIHTGIMLSTRLLNEANQQDASERKRRG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA