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The map label for this gene is ybjK [H]

Identifier: 218548365

GI number: 218548365

Start: 1019565

End: 1020104

Strand: Direct

Name: ybjK [H]

Synonym: EFER_0987

Alternate gene names: 218548365

Gene position: 1019565-1020104 (Clockwise)

Preceding gene: 218548361

Following gene: 218548366

Centisome position: 22.22

GC content: 46.11

Gene sequence:

>540_bases
GTGCGACGGAGCAACGATCCCCAAAGGCGAGAAAAGATTATTGCTGCCACTCTGGAAGCCATTGCGACGCACGGTATCCA
TGCCGTGACACACCGTAAAATTGCGATAATTGCGCAAGTCCCGTTGGGATCGTTGACTTATTATTTCTCGGGAATCGATG
AATTATTGACCATTGCATTTCGTCGTTTTACGGAAATCATGACAGAGCAATACCAGTCTTTTTTTACCGGAGTCTCGGAA
CCGATAGAAGCCTGTGAAGCCATCACTGAGATGATCCATAGTGCGCAAATCACCACGCCAGAGAAAATGGCGTTGATGTA
TCAGTTATATGCTTTTGCCAGTCGTAAACCTGCTTTGAAAAAGGTCATGCAAAACTGGATGCACAGCAGCCAGCAGACGT
TGCAACAGTGGTTTGATCCCGATACGGCCCGGGCACTGGATGCATTTATTGAAGGTATGACATTGCATTTTGTGACTGAC
AGTAAGCCACTGACACGCGACGATATTTTAAAAATGGTAAAAAGAATCGCTGGGGAGTAA

Upstream 100 bases:

>100_bases
ATCTGGCAGTCATAAATCCTGTCAAATAAGAAGAAGAGAGAGGACAACAGTAGCAAGGTTGTGTACATTTGTACACATAC
CTGTTTAATGAGGAAGTGCA

Downstream 100 bases:

>100_bases
TACTTACGTTATGTGTATGCGAGAAGAAAGGAGAAGTGGCATATATGAGGATAAACATCGAATAGATGGACTAGCAGTAT
ATAAATAATTTATCGATATT

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MRRSNDPQRREKIIAATLEAIATHGIHAVTHRKIAIIAQVPLGSLTYYFSGIDELLTIAFRRFTEIMTEQYQSFFTGVSE
PIEACEAITEMIHSAQITTPEKMALMYQLYAFASRKPALKKVMQNWMHSSQQTLQQWFDPDTARALDAFIEGMTLHFVTD
SKPLTRDDILKMVKRIAGE

Sequences:

>Translated_179_residues
MRRSNDPQRREKIIAATLEAIATHGIHAVTHRKIAIIAQVPLGSLTYYFSGIDELLTIAFRRFTEIMTEQYQSFFTGVSE
PIEACEAITEMIHSAQITTPEKMALMYQLYAFASRKPALKKVMQNWMHSSQQTLQQWFDPDTARALDAFIEGMTLHFVTD
SKPLTRDDILKMVKRIAGE
>Mature_179_residues
MRRSNDPQRREKIIAATLEAIATHGIHAVTHRKIAIIAQVPLGSLTYYFSGIDELLTIAFRRFTEIMTEQYQSFFTGVSE
PIEACEAITEMIHSAQITTPEKMALMYQLYAFASRKPALKKVMQNWMHSSQQTLQQWFDPDTARALDAFIEGMTLHFVTD
SKPLTRDDILKMVKRIAGE

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787069, Length=178, Percent_Identity=73.5955056179775, Blast_Score=284, Evalue=2e-78,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20468; Mature: 20468

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRSNDPQRREKIIAATLEAIATHGIHAVTHRKIAIIAQVPLGSLTYYFSGIDELLTIAF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHH
RRFTEIMTEQYQSFFTGVSEPIEACEAITEMIHSAQITTPEKMALMYQLYAFASRKPALK
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHH
KVMQNWMHSSQQTLQQWFDPDTARALDAFIEGMTLHFVTDSKPLTRDDILKMVKRIAGE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRSNDPQRREKIIAATLEAIATHGIHAVTHRKIAIIAQVPLGSLTYYFSGIDELLTIAF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHH
RRFTEIMTEQYQSFFTGVSEPIEACEAITEMIHSAQITTPEKMALMYQLYAFASRKPALK
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHH
KVMQNWMHSSQQTLQQWFDPDTARALDAFIEGMTLHFVTDSKPLTRDDILKMVKRIAGE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]