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The map label for this gene is nlpD [H]

Identifier: 218547742

GI number: 218547742

Start: 337109

End: 338251

Strand: Direct

Name: nlpD [H]

Synonym: EFER_0327

Alternate gene names: 218547742

Gene position: 337109-338251 (Clockwise)

Preceding gene: 218547740

Following gene: 218547743

Centisome position: 7.35

GC content: 51.62

Gene sequence:

>1143_bases
ATGAGCGCGGGAAGCCCAAAATTCACCGTTCGCCGCATTGCGGCTTTGTCACTGGTTTCGCTCTGGCTGGCAGGTTGTAC
AGATACGTCGAATCCACCAGCACCGGTTACCTCCGTCAACGGCGGTAATTCGACCAATACCAGTTCCGGGATGCTAATTA
CGCCGCCACCAAAAATGGGGTCAACCAGCACCGGGATACAACAGCCCCAAATTCAGTCAGTACAACAACCACAAATTCAA
TCTGCACAGCAGCCGCAAATCCAGCCAGTGCAGCCAGTAGCTCAGCAGCCGGTACAGATGGAAAACGGACGCATCGTCTA
CAACCGTCAGTATGGGAACATTCCGAAAGGCAGTTATAGCGGCAGTACCTATACCGTGAAAAAAGGCGACACACTTTTCT
ATATCGCCTGGATTACTGGCAACGATTTCCGCGATCTCGCCCAACGCAATAATATTCAGGCGCCATACGCGCTGAACGTC
GGTCAGACCTTACAGGTGGGTAATGCTTCAGGTACGCCAATCACTGGAGGAAATGCAATTACCCAGGCCGACGCAGCAGA
GCAAGGAGTTGTGATCAAGCCTGCACAAAATTCAACCGTTGCTGTTGCGTCGCAACCGACAATTACGTATTCTGAGTCTT
CGGGTGAACAGAGTGCTAACAAAATGTTGCCGAACAACAAGCCAACTGCGACGGCTGTCACAGCGCCTGTAACGGTACCA
ACAGCAAGCGCAACCGAGCCAACTGCAAGCAGTTCGTCCAACAGTGCCGCTATTTCTGCATGGCTCTGGCCGACGAGTGG
CAAAGTGATCGAAACCTTTGGGGCTTCCGAAGGGGGCAATAAAGGGATCGATATTGCAGGCAGTAAAGGACAGGCAATCA
ACGCGACCGCAGATGGCCGTGTTGTTTATGCCGGTAACGCGCTGCGCGGTTACGGTAATCTGATTATCATCAAACATAAT
GATGATTACCTGAGTGCCTACGCCCATAACGATACAATGCTGGTCCGGGAACAACAAGAAGTGAAGGCGGGGCAAAAAAT
AGCGACCATGGGTAGCACCGGAACCAGTTCAACACGCTTGCATTTTGAAATTCGTTACAAGGGGAAATCCGTAAACCCGC
TGCGTTATTTACCGCAGCGATAA

Upstream 100 bases:

>100_bases
AGCAGGTCAGCGTATCGTGAACACGTTTTTCAGTGTTCAGTCCGACGCCTTGCGCGGTAATTATGTCACTGGTTATTAAC
CAATTTTTCCTGGGGGATAA

Downstream 100 bases:

>100_bases
TTCGGCGGAACCAGGCTTTTGCTTGCTAGTTCCGTCAAGGGATCACGGGTAGGAGCCACCTTATGAGTCAGAATACGCTG
AAAGTTCATGATTTAAATGA

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MSAGSPKFTVRRIAALSLVSLWLAGCTDTSNPPAPVTSVNGGNSTNTSSGMLITPPPKMGSTSTGIQQPQIQSVQQPQIQ
SAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNV
GQTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATAVTAPVTVP
TASATEPTASSSSNSAAISAWLWPTSGKVIETFGASEGGNKGIDIAGSKGQAINATADGRVVYAGNALRGYGNLIIIKHN
DDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR

Sequences:

>Translated_380_residues
MSAGSPKFTVRRIAALSLVSLWLAGCTDTSNPPAPVTSVNGGNSTNTSSGMLITPPPKMGSTSTGIQQPQIQSVQQPQIQ
SAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNV
GQTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATAVTAPVTVP
TASATEPTASSSSNSAAISAWLWPTSGKVIETFGASEGGNKGIDIAGSKGQAINATADGRVVYAGNALRGYGNLIIIKHN
DDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR
>Mature_379_residues
SAGSPKFTVRRIAALSLVSLWLAGCTDTSNPPAPVTSVNGGNSTNTSSGMLITPPPKMGSTSTGIQQPQIQSVQQPQIQS
AQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVG
QTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATAVTAPVTVPT
ASATEPTASSSSNSAAISAWLWPTSGKVIETFGASEGGNKGIDIAGSKGQAINATADGRVVYAGNALRGYGNLIIIKHND
DYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=380, Percent_Identity=88.4210526315789, Blast_Score=606, Evalue=1e-175,
Organism=Escherichia coli, GI87082174, Length=264, Percent_Identity=43.9393939393939, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI87082297, Length=116, Percent_Identity=38.7931034482759, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 39958; Mature: 39827

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGSPKFTVRRIAALSLVSLWLAGCTDTSNPPAPVTSVNGGNSTNTSSGMLITPPPKMG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCC
STSTGIQQPQIQSVQQPQIQSAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYS
CCCCCCCCCHHHHCCCCHHHCCCCCCCCCCCHHHHCCEEECCCEEEEEECCCCCCCCCCC
GSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAI
CCEEEEECCCEEEEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCEECCCCCE
TQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATAVTAPVTVP
EECCCCCCCEEEECCCCCEEEEECCCEEEECCCCCCHHHHHCCCCCCCCEEEEEECEEEC
TASATEPTASSSSNSAAISAWLWPTSGKVIETFGASEGGNKGIDIAGSKGQAINATADGR
CCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCE
VVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRL
EEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCCCCCCEEE
HFEIRYKGKSVNPLRYLPQR
EEEEEECCCCCCHHHCCCCC
>Mature Secondary Structure 
SAGSPKFTVRRIAALSLVSLWLAGCTDTSNPPAPVTSVNGGNSTNTSSGMLITPPPKMG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCC
STSTGIQQPQIQSVQQPQIQSAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYS
CCCCCCCCCHHHHCCCCHHHCCCCCCCCCCCHHHHCCEEECCCEEEEEECCCCCCCCCCC
GSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAI
CCEEEEECCCEEEEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCEECCCCCE
TQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATAVTAPVTVP
EECCCCCCCEEEECCCCCEEEEECCCEEEECCCCCCHHHHHCCCCCCCCEEEEEECEEEC
TASATEPTASSSSNSAAISAWLWPTSGKVIETFGASEGGNKGIDIAGSKGQAINATADGR
CCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCE
VVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRL
EEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCCCCCCEEE
HFEIRYKGKSVNPLRYLPQR
EEEEEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]